Homologs in group_3688

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS02635 PMI_RS02635 28.6 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS05720 PMI_RS05720 24.0 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS13465 PMI_RS13465 34.6 Proteus mirabilis HI4320 - fimbrial protein

Distribution of the homologs in the orthogroup group_3688

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3688

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q99003 5.05e-18 87 32 5 199 1 f17aG F17a-G fimbrial adhesin Escherichia coli
Q47199 5.2e-18 87 32 5 199 1 f17dG F17d-G fimbrial adhesin Escherichia coli
Q47033 1.3e-17 85 32 4 185 1 f17cG F17c-G fimbrial adhesin Escherichia coli
Q9RH91 1.34e-17 85 32 4 185 1 f17fG F17f-G fimbrial adhesin Escherichia coli
Q9RH92 1.38e-17 85 32 4 185 1 f17eG F17e-G fimbrial adhesin Escherichia coli
Q47341 1.39e-17 85 32 4 185 1 f17gG F17g-G fimbrial adhesin Escherichia coli
Q47200 1.52e-17 85 32 4 185 1 f17bG F17b-G fimbrial adhesin Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01050
Feature type CDS
Gene -
Product fimbrial protein
Location 225481 - 226506 (strand: 1)
Length 1026 (nucleotides) / 341 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3688
Orthogroup size 4
N. genomes 2

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Protein Sequence

MSRIMSVFIIILFMLPPLTGYAGNNVRFNIPPISYSGPADNVGIGVPISQGWSSTIVHEYICDQNIEKRTIATAKIISLSQPLSLTAHIDGVDYPIYDTGTAGIGWVMGVKDTHATNFTPLNINENQWYPAPGTGPSLPLNIGGSLKIYLVKTNSHLVSGRTRISPNNIATIYCYSEKGELLDSGNISINYVPIEVKATGCRVLGNTDTSISLGEFRTGQFPSVNSTKGNGVANTNISCDQGVHVAVTISDQSNKTNTSNIIGLTPDSKAKGVGIQALYNGKVVTLGPDSTSKNNTNQFELISTTQNNQLIPFQLGFQYIRTGDMKAGSANGLVGITFSYQ

Flanking regions ( +/- flanking 50bp)

AAATAAAATCATTACCCGGTTAAAAAGCGAATGTCGATAGAGAGAGTATTATGTCACGTATTATGTCGGTTTTTATAATTATCTTATTTATGTTACCACCGCTGACAGGGTATGCGGGCAATAATGTCAGATTCAATATACCGCCTATATCTTATAGCGGACCGGCTGATAATGTGGGTATAGGTGTACCTATCAGCCAGGGGTGGAGCTCTACTATTGTTCATGAATATATTTGTGACCAAAATATAGAGAAAAGAACTATTGCTACCGCAAAAATAATATCACTTTCACAGCCATTATCTCTGACTGCACATATTGATGGTGTTGATTATCCTATTTATGACACAGGGACCGCAGGGATTGGCTGGGTTATGGGCGTAAAAGACACCCACGCGACTAATTTTACACCATTGAACATCAATGAAAACCAGTGGTACCCAGCTCCCGGAACCGGACCATCATTGCCTCTAAATATCGGAGGATCGTTAAAAATTTACTTGGTGAAAACAAATTCACATTTAGTCAGTGGGAGAACACGGATATCACCTAACAATATTGCAACTATTTATTGCTATTCTGAAAAGGGTGAACTTTTAGATAGCGGTAATATTTCGATTAATTATGTTCCTATTGAGGTTAAAGCAACGGGATGTAGAGTTTTAGGCAATACAGATACATCTATTTCACTCGGTGAGTTTCGTACAGGACAATTTCCTTCTGTCAATAGTACAAAAGGTAATGGAGTCGCTAATACAAATATATCTTGTGATCAAGGTGTTCATGTAGCCGTGACAATTTCGGATCAATCAAATAAAACAAACACAAGTAATATTATCGGGCTCACTCCTGATTCGAAAGCAAAAGGTGTCGGTATTCAGGCACTCTATAATGGAAAAGTTGTCACTTTAGGGCCTGATAGCACCAGTAAAAATAATACGAATCAATTCGAGTTAATCAGTACAACACAAAATAATCAACTTATTCCTTTCCAGCTGGGTTTTCAGTATATACGGACTGGTGATATGAAAGCAGGTAGTGCAAACGGACTTGTCGGAATTACTTTTTCCTATCAGTAGCGGGGGAACAATAATGTCACGTTTTTTATTTTTAAGTGTGTTTTTTTTAT