Homologs in group_1188

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06850 FBDBKF_06850 94.4 Morganella morganii S1 dcuC anaerobic C4-dicarboxylate transporter DcuC
EHELCC_04120 EHELCC_04120 94.4 Morganella morganii S2 dcuC anaerobic C4-dicarboxylate transporter DcuC
NLDBIP_04120 NLDBIP_04120 94.4 Morganella morganii S4 dcuC anaerobic C4-dicarboxylate transporter DcuC
LHKJJB_09950 LHKJJB_09950 94.4 Morganella morganii S3 dcuC anaerobic C4-dicarboxylate transporter DcuC
HKOGLL_09025 HKOGLL_09025 94.4 Morganella morganii S5 dcuC anaerobic C4-dicarboxylate transporter DcuC
PMI_RS03210 PMI_RS03210 78.1 Proteus mirabilis HI4320 dcuC anaerobic C4-dicarboxylate transporter DcuC

Distribution of the homologs in the orthogroup group_1188

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1188

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8FJZ8 0.0 584 76 2 448 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABP5 0.0 583 76 2 448 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Shigella flexneri
P0ABP3 0.0 583 76 2 448 1 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli (strain K12)
P0ABP4 0.0 583 76 2 448 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli O157:H7
Q9KLS6 0.0 520 59 3 464 3 dcuC Probable anaerobic C4-dicarboxylate transporter DcuC Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P45428 1.43e-86 275 35 3 461 1 dcuD Putative cryptic C4-dicarboxylate transporter DcuD Escherichia coli (strain K12)
P44018 4.46e-12 70 25 7 246 5 HI_0585 Putative uncharacterized transporter HI_0585 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01000
Feature type CDS
Gene dcuC
Product anaerobic C4-dicarboxylate transporter DcuC
Location 213594 - 214994 (strand: 1)
Length 1401 (nucleotides) / 466 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1188
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03606 C4-dicarboxylate anaerobic carrier

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3069 Energy production and conversion (C) C C4-dicarboxylate transporter DcuC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03326 C4-dicarboxylate transporter, DcuC family - -

Protein Sequence

MLDLLIGAAVAVGVGRYIIKGYSATGVLMVGGLLLLIVSVLMGKNILPAAAVSTGWGPTNIIEYVKYLLMNRGGDLGMMIMVLCGFAAYMTHIGANDVVIKLVSKPLQVVNSPYILMIVAYFIACLMSLAVSSATGLGVLLMATLFPVMVNVGISRGAAAAICASPAAIILAPTSGDVVIAAEASNIALKEFAFSLTLPISIVAIIAMAIAHFFWQRYLDRKEDIKSEILDVKEITTNAPKFYAILPFLPIIGVLLFDGKPFGSFLGMDFLKGIVLPELHIVTIIVGCIILSAIIEFVRGFDGKKVYAGLDVCYRGMADAFATVVMLLVAAGVFAQGLSTVGFISGLIDLAQSFGSGAIIMMIALVIITMLAAMTTGSGNAPFYAFVELIPRLAQQMGINPAYLVIPMLQASNLGRTMSPVSGVVVAVAGMAKISPFEVVKRTSVPVLVGLLVVIIATELMVPVVL

Flanking regions ( +/- flanking 50bp)

AGAGTGCTTTAATCATTCTTATAACTAAAAACATGCAGACAGGAGTATAAATGTTAGATCTTCTCATTGGTGCAGCCGTTGCCGTCGGCGTCGGGCGCTACATTATCAAGGGGTATTCAGCCACAGGGGTGTTAATGGTCGGGGGTTTACTGCTTCTGATCGTGAGTGTCCTGATGGGCAAAAATATTCTGCCGGCCGCCGCTGTCTCAACCGGCTGGGGCCCGACAAACATCATCGAATACGTTAAATACCTGCTCATGAACCGTGGCGGCGACCTCGGTATGATGATTATGGTGCTGTGTGGTTTTGCCGCCTATATGACGCACATCGGCGCGAACGATGTGGTTATCAAACTGGTGTCCAAACCGCTTCAGGTTGTGAACTCACCTTACATCCTGATGATCGTGGCGTATTTCATTGCCTGCCTGATGTCGCTTGCGGTGTCATCTGCAACCGGTCTGGGTGTGTTACTGATGGCGACTCTGTTCCCGGTAATGGTTAACGTCGGGATCAGCCGTGGCGCGGCAGCCGCTATTTGTGCCTCTCCGGCAGCGATTATTCTCGCACCGACATCCGGTGACGTGGTGATTGCGGCAGAAGCGTCGAATATTGCGCTGAAAGAGTTTGCGTTCAGTCTGACACTGCCGATCTCCATTGTGGCTATTATTGCGATGGCGATTGCTCACTTTTTCTGGCAGCGCTATCTCGATCGCAAAGAAGATATCAAATCTGAAATCCTCGATGTGAAAGAAATCACAACAAATGCGCCGAAATTCTATGCCATTCTGCCATTCCTGCCGATTATCGGCGTGCTGTTGTTTGACGGAAAACCATTCGGCTCCTTCCTCGGAATGGATTTCTTAAAAGGCATCGTTCTGCCTGAGTTGCATATCGTCACGATTATTGTCGGCTGTATTATTCTTTCCGCCATTATTGAATTTGTGCGCGGATTTGACGGCAAGAAAGTCTATGCCGGGCTGGATGTCTGCTATCGCGGTATGGCTGATGCGTTTGCCACGGTTGTTATGCTGTTGGTTGCGGCAGGCGTATTTGCCCAGGGTCTGAGCACGGTCGGTTTTATCTCCGGGCTTATCGATCTTGCGCAATCCTTTGGTTCCGGGGCGATCATCATGATGATTGCACTGGTCATTATTACCATGCTGGCGGCAATGACCACCGGCTCCGGTAATGCGCCGTTCTATGCGTTTGTGGAGCTTATTCCGCGTCTGGCACAGCAAATGGGGATTAACCCGGCGTACCTGGTTATCCCGATGCTTCAGGCATCAAACCTGGGCCGTACCATGTCACCGGTTTCCGGTGTGGTGGTTGCGGTTGCCGGTATGGCGAAAATTTCACCGTTTGAAGTCGTCAAACGCACCTCCGTTCCGGTGCTGGTCGGCTTGCTGGTTGTGATTATCGCGACTGAATTAATGGTACCTGTCGTACTGTAAGCATCAAAAGCCGCGCGGGGTGATCCTGTGCGGTTTTTTTTATCAATACG