Homologs in group_1523

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09840 FBDBKF_09840 95.3 Morganella morganii S1 sdhC succinate dehydrogenase cytochrome b556 subunit
EHELCC_04640 EHELCC_04640 95.3 Morganella morganii S2 sdhC succinate dehydrogenase cytochrome b556 subunit
NLDBIP_04640 NLDBIP_04640 95.3 Morganella morganii S4 sdhC succinate dehydrogenase cytochrome b556 subunit
LHKJJB_13990 LHKJJB_13990 95.3 Morganella morganii S3 sdhC succinate dehydrogenase cytochrome b556 subunit
HKOGLL_12545 HKOGLL_12545 95.3 Morganella morganii S5 sdhC succinate dehydrogenase cytochrome b556 subunit
PMI_RS02780 PMI_RS02780 80.2 Proteus mirabilis HI4320 sdhC succinate dehydrogenase cytochrome b556 subunit

Distribution of the homologs in the orthogroup group_1523

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1523

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P63725 2.21e-67 202 76 0 129 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P63726 2.21e-67 202 76 0 129 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Salmonella typhi
P69054 3.04e-65 197 73 0 129 1 sdhC Succinate dehydrogenase cytochrome b556 subunit Escherichia coli (strain K12)
P69055 3.04e-65 197 73 0 129 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Escherichia coli O157:H7
P51055 2.6e-21 85 39 2 126 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q59659 1.48e-11 60 31 1 122 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Paracoccus denitrificans
Q4UKC1 3.69e-11 59 31 3 125 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
P41085 2.06e-10 57 32 4 126 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia prowazekii (strain Madrid E)
Q68XP1 4.06e-10 56 32 4 126 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q92J99 9.31e-10 55 34 5 126 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q1RHB5 3.3e-08 51 34 5 128 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia bellii (strain RML369-C)
Q8T2T5 3.15e-06 47 30 5 119 3 sdhC Succinate dehydrogenase cytochrome b560 subunit, mitochondrial Dictyostelium discoideum
P35721 0.000113 42 34 7 126 3 SDH3 Succinate dehydrogenase cytochrome b560 subunit Marchantia polymorpha
P80481 0.000895 40 31 2 99 3 SDH3 Succinate dehydrogenase cytochrome b560 subunit Reclinomonas americana

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00505
Feature type CDS
Gene sdhC
Product succinate dehydrogenase cytochrome b556 subunit
Location 107217 - 107606 (strand: 1)
Length 390 (nucleotides) / 129 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1523
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2009 Energy production and conversion (C) C Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Kegg Ortholog Annotation(s)

Protein Sequence

MGKIVKKQRPVNLDLQTIHFPITAIASILHRASGVITFIAVAILLWLLGLSLSSPEGFREAADLMSGFFAKFILWGILTALAYHICGGIRHMLMDFGFVDETLAAGISSAKISMVLAVILAVLAGVLVW

Flanking regions ( +/- flanking 50bp)

TGTCTGATTTCCGCCCCGGTCCGGAGGAAGGAAAAATAATAAAAAGCTGTGTGGGCAAAATTGTGAAAAAACAACGACCTGTCAATTTAGACTTGCAGACGATCCATTTTCCGATTACTGCAATCGCTTCAATCTTACACCGTGCCTCCGGCGTCATCACTTTCATTGCTGTAGCGATTCTGCTGTGGCTGTTAGGGCTGTCGCTGTCATCACCGGAAGGGTTCCGGGAAGCCGCTGACCTTATGAGTGGTTTTTTCGCGAAGTTTATCCTCTGGGGCATTCTCACCGCACTGGCTTACCACATCTGTGGGGGCATTCGTCACATGTTAATGGATTTTGGTTTTGTTGATGAAACACTGGCTGCCGGTATTTCATCTGCGAAGATTTCCATGGTTCTGGCTGTGATTTTAGCTGTGTTGGCGGGGGTTCTGGTATGGTGACAAATTCAAAAAACAGCGCAACCACACTGGGTCGCAGCGGTATTCAGGAT