Homologs in group_1573

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10200 FBDBKF_10200 88.5 Morganella morganii S1 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
EHELCC_05000 EHELCC_05000 88.5 Morganella morganii S2 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
NLDBIP_05000 NLDBIP_05000 88.5 Morganella morganii S4 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
LHKJJB_13630 LHKJJB_13630 88.5 Morganella morganii S3 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
HKOGLL_12905 HKOGLL_12905 88.5 Morganella morganii S5 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
PMI_RS01965 PMI_RS01965 63.9 Proteus mirabilis HI4320 - tRNA-uridine aminocarboxypropyltransferase

Distribution of the homologs in the orthogroup group_1573

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1573

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q47319 1.65e-87 261 58 2 221 1 tapT tRNA-uridine aminocarboxypropyltransferase Escherichia coli (strain K12)
Q9VI85 1.82e-06 50 24 4 173 1 Dtwd2 tRNA-uridine aminocarboxypropyltransferase 2 Drosophila melanogaster
Q9D0U1 2.59e-05 47 26 5 171 2 Dtwd2 tRNA-uridine aminocarboxypropyltransferase 2 Mus musculus
Q4R7M4 0.000157 45 25 5 171 2 DTWD2 tRNA-uridine aminocarboxypropyltransferase 2 Macaca fascicularis
Q8NBA8 0.000205 45 25 5 171 1 DTWD2 tRNA-uridine aminocarboxypropyltransferase 2 Homo sapiens

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00130
Feature type CDS
Gene -
Product tRNA-uridine aminocarboxypropyltransferase
Location 35582 - 36286 (strand: -1)
Length 705 (nucleotides) / 234 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1573
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03942 DTW domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3148 Translation, ribosomal structure and biogenesis (J) J tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05812 tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] - -

Protein Sequence

MKTNSVHQLRQRRLMQSTRPFRARGCRVTRCNDCLLPEKNCLCDTIKTQPARSQFCLLMYDTEPLKPSNTGKLIADILPDTQAFMWSRTDPDEALLTLLRDPSRQPYLIFPQAYATPPRRVFTDVPENTKPPLFILLDGTWPEARKMFRKSPYLNDIPLLSINDIAQKDYLLRVAAREDQHCTAEVAAAALIMAGDSAAGKQLLDHFIYFRYQYLKGKSHLPVAQIAAQEQLLG

Flanking regions ( +/- flanking 50bp)

GCGATAACAGTACAATGCATACTGTTTTTTGTGAAGACCAGCCGATAAAGATGAAGACCAATTCAGTTCACCAGTTACGTCAGCGCCGCCTGATGCAATCCACCCGCCCGTTCCGCGCACGGGGATGTCGTGTAACACGTTGTAATGACTGCCTGTTACCGGAAAAAAATTGTTTGTGTGACACCATAAAAACACAGCCGGCACGCAGTCAGTTCTGTCTGCTGATGTATGATACCGAGCCGCTCAAACCCAGCAATACCGGAAAACTTATTGCCGATATATTGCCCGATACTCAGGCCTTCATGTGGTCACGAACCGATCCTGATGAGGCGCTGCTGACACTTCTGCGTGACCCGTCCCGTCAGCCGTACCTGATTTTCCCGCAGGCGTATGCCACACCACCGCGCCGGGTATTCACAGATGTGCCGGAAAATACCAAACCGCCGCTGTTTATTCTGCTTGATGGCACCTGGCCCGAAGCGCGTAAAATGTTCCGCAAAAGCCCGTATCTTAATGATATTCCGCTGTTGTCGATCAATGACATTGCGCAAAAAGATTATCTGCTGCGGGTCGCGGCGCGGGAAGATCAGCACTGTACTGCCGAAGTGGCGGCTGCTGCATTAATCATGGCGGGCGATAGCGCTGCCGGAAAACAGCTGCTGGATCACTTTATCTACTTCCGCTATCAGTATTTGAAGGGCAAGTCACATCTTCCGGTGGCACAAATTGCAGCACAGGAACAACTTTTAGGCTAAATTAAAGCTCACGGGAACCTGACTGAGGGAAATACCATGAGCCAGCGCGG