Homologs in group_1573

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10200 FBDBKF_10200 100.0 Morganella morganii S1 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
NLDBIP_05000 NLDBIP_05000 100.0 Morganella morganii S4 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
LHKJJB_13630 LHKJJB_13630 100.0 Morganella morganii S3 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
HKOGLL_12905 HKOGLL_12905 100.0 Morganella morganii S5 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
F4V73_RS00130 F4V73_RS00130 88.5 Morganella psychrotolerans - tRNA-uridine aminocarboxypropyltransferase
PMI_RS01965 PMI_RS01965 63.9 Proteus mirabilis HI4320 - tRNA-uridine aminocarboxypropyltransferase

Distribution of the homologs in the orthogroup group_1573

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1573

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q47319 4.73e-89 265 59 3 232 1 tapT tRNA-uridine aminocarboxypropyltransferase Escherichia coli (strain K12)
Q9VI85 1.97e-05 47 28 1 92 1 Dtwd2 tRNA-uridine aminocarboxypropyltransferase 2 Drosophila melanogaster
Q9D0U1 0.000227 45 26 5 169 2 Dtwd2 tRNA-uridine aminocarboxypropyltransferase 2 Mus musculus

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_05000
Feature type CDS
Gene tapT
Product tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
Location 325645 - 326349 (strand: 1)
Length 705 (nucleotides) / 234 (amino acids)

Contig

Accession ZDB_214
Length 335585 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1573
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03942 DTW domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3148 Translation, ribosomal structure and biogenesis (J) J tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05812 tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] - -

Protein Sequence

MKTNSVYQLRQRRLAQSTRVFRARGCRVVRCNYCLLPEKNCLCDTIQTRDARSQFCLLMYDTEPLKPSNTGKLIADVLPDTQAFLWSRTEPDEALLTLLKDDTRQPYLIFPQAYATPPRQVFSDVPENTKPPLFILLDGTWPEARKMFRKSPYLDNIPLLSINDLAQKDYLLRVAAREDQHCTAEVAAAALMMAGDTAAGKQLLDHFTCFRRQYLKGKSHLPVAQIRAEELLLG

Flanking regions ( +/- flanking 50bp)

AGCGTTAACAGTACAATGCATACTGTTTTTTGTGAAACCAGCCGATAAAAATGAAGACCAATTCTGTTTACCAGTTACGCCAGCGGCGTCTGGCACAATCCACCCGTGTTTTCCGTGCCCGGGGATGTCGTGTAGTCCGTTGTAATTACTGCTTATTACCCGAAAAAAACTGTCTGTGTGACACCATACAGACCCGGGATGCACGCAGTCAGTTCTGCCTGCTGATGTATGATACCGAACCGCTCAAACCCAGCAATACCGGGAAGCTTATCGCCGATGTCCTGCCGGACACACAGGCTTTTCTGTGGTCGCGTACCGAACCGGACGAGGCCCTGCTCACGCTGCTGAAAGATGACACCCGCCAGCCGTACCTGATTTTCCCGCAGGCGTATGCCACTCCGCCGCGTCAGGTGTTCAGTGATGTGCCGGAAAATACAAAGCCGCCGCTGTTTATTCTGCTCGACGGTACCTGGCCGGAAGCACGCAAAATGTTCCGTAAAAGCCCGTATCTCGATAACATTCCGCTGCTCTCCATCAACGATCTGGCGCAGAAAGATTATCTGCTGCGGGTTGCGGCACGGGAAGATCAGCACTGTACCGCCGAAGTGGCCGCTGCGGCACTGATGATGGCAGGTGATACCGCGGCCGGAAAACAGCTTCTGGATCACTTCACCTGCTTCCGCCGTCAGTATTTGAAGGGTAAGTCACATCTTCCGGTGGCACAAATCAGAGCAGAGGAGCTGCTTTTAGGCTAAATTAAAGCACACGGGAATCCGGTCTGAGGAGAACACCATGAGTCAGCGCG