Homologs in group_1573

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10200 FBDBKF_10200 63.9 Morganella morganii S1 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
EHELCC_05000 EHELCC_05000 63.9 Morganella morganii S2 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
NLDBIP_05000 NLDBIP_05000 63.9 Morganella morganii S4 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
LHKJJB_13630 LHKJJB_13630 63.9 Morganella morganii S3 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
HKOGLL_12905 HKOGLL_12905 63.9 Morganella morganii S5 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain
F4V73_RS00130 F4V73_RS00130 63.9 Morganella psychrotolerans - tRNA-uridine aminocarboxypropyltransferase

Distribution of the homologs in the orthogroup group_1573

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1573

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q47319 3.03e-87 260 58 1 218 1 tapT tRNA-uridine aminocarboxypropyltransferase Escherichia coli (strain K12)
Q9VI85 0.00011 45 25 6 185 1 Dtwd2 tRNA-uridine aminocarboxypropyltransferase 2 Drosophila melanogaster

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01965
Feature type CDS
Gene -
Product tRNA-uridine aminocarboxypropyltransferase
Location 463436 - 464119 (strand: -1)
Length 684 (nucleotides) / 227 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1573
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03942 DTW domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3148 Translation, ribosomal structure and biogenesis (J) J tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05812 tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] - -

Protein Sequence

MHDNAVSRLRQYRVSISTRPYKARGFRVKRCTFCLLPEKQCLCDTIIHQTAKSRFCLMMYDTEVMKPSNTGKLIADVLPDTLAFLWSRTEPEKALLDAINDPHRQAYVVFPDSYASPSRKVYHQLPANSKPPLFILLDGTWTEARKMFRKSPYLDALPLFSINEASKCDYMLRQAAREEQHCTAEVAASILANVGDDLASQQLFSHFSYFRQQYLIGKPDRRQAKEE

Flanking regions ( +/- flanking 50bp)

GGGATCATGGTAATATTCATTCCTTTATTTATGATTGTGGTCTTTCTGTTATGCATGACAATGCGGTTTCTCGACTTCGTCAATATCGAGTTTCTATCTCTACACGCCCATATAAAGCCAGAGGCTTTCGTGTTAAACGATGCACTTTTTGTTTATTACCTGAAAAACAGTGTCTGTGTGACACCATCATTCATCAAACCGCGAAAAGCCGTTTTTGTTTAATGATGTACGATACAGAAGTGATGAAACCAAGTAATACAGGAAAATTAATTGCCGATGTTTTACCCGATACACTTGCCTTTTTATGGTCACGTACCGAGCCTGAAAAAGCCTTACTTGATGCAATTAATGATCCGCATCGACAAGCTTATGTCGTCTTCCCAGACAGCTATGCTTCTCCTTCGCGAAAAGTTTATCACCAGTTACCTGCAAACAGTAAGCCACCGCTATTTATCTTACTAGACGGCACTTGGACAGAGGCGAGAAAAATGTTTCGTAAAAGCCCCTACCTTGATGCATTACCACTGTTTTCAATTAATGAAGCCAGTAAATGTGACTACATGCTCCGTCAAGCAGCAAGAGAAGAGCAACATTGTACCGCTGAAGTTGCCGCTTCTATTTTAGCCAATGTCGGCGATGATTTAGCGTCACAACAGCTTTTTTCTCATTTTAGTTACTTTCGTCAACAATATTTAATTGGAAAACCAGACAGACGTCAGGCAAAAGAAGAGTAAATCAGCTACATTGAATACAGTTTATCATAAACTTAGGAGTTGATATGAGC