Homologs in group_3685

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS07005 F4V73_RS07005 20.9 Morganella psychrotolerans - type VI secretion system baseplate subunit TssF
F4V73_RS09395 F4V73_RS09395 28.9 Morganella psychrotolerans tssF type VI secretion system baseplate subunit TssF
F4V73_RS16745 F4V73_RS16745 27.6 Morganella psychrotolerans tssF type VI secretion system baseplate subunit TssF

Distribution of the homologs in the orthogroup group_3685

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3685

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I744 1.31e-58 210 27 11 605 1 tssF1 Type VI secretion system component TssF1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00075
Feature type CDS
Gene tssF
Product type VI secretion system baseplate subunit TssF
Location 19566 - 21413 (strand: -1)
Length 1848 (nucleotides) / 615 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3685
Orthogroup size 4
N. genomes 1

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Genomic region

Domains

PF05947 Type VI secretion system, TssF

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3519 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component VasA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11896 type VI secretion system protein ImpG - -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG041076 type VI secretion system baseplate subunit TssF VF1036 Effector delivery system

Protein Sequence

MLSERFLTLYNEELRFLREDGMLFAKANPQVAQYLGMMPDGVLDPFVERLLEGTAFLSARVHERLNNEQPEVAIQMINRLAPFWFTPLPSIATIALEPDLTSPQWHANVTLPRGSKLSLHDPSLGHKHATFTTGKDLNIQPLIIDSAECATTPSARLPQSVLQCMQDGKAHISLNLNTQGVVALSELNFSPMVLTFAGDIVHANQLLAAIQNDTLRVILWSKNDDKTPFMLVLDPTHIRQGGLQPEDALLPAVTGELPGSRLLREYFAAPSRFFSIELHGLNPFLQAGDKCTEFNLIFVLNKTPVKLTDNVRATDFRLFATPVINLSRRRCSPVLINGEHTEYPIIVDQLNPGLYEIHHLLSVDGLLADKGYVPFSPLHGYTKFDEPPVSAGYSLRRVRRITDEKYDNAPVMPRDSLFISLSAGPVNFMPDSIKSLSIDAMVCDRYLDPSRLQQPRIQLDSALPVGPAEILRAPSRPQGVPGSADAWKVLQLLSVNPLRYALPDFPDNTVLLKEWLSLFCPQDDSRQQRRIESLRQSYVTHRFECNPLPGPIAWSRGAEITVDLRGNHHSDKGAWLFARILHHALAEYCELGQTLRMQLNIDGEPLAQWEPTGGC

Flanking regions ( +/- flanking 50bp)

GTCCGGGTTATCTGACCCGTAAACAATAAACAAAGGGACAGGATGTCATTATGTTAAGCGAACGTTTCCTGACATTATATAACGAGGAGTTACGCTTCCTGCGGGAGGACGGCATGTTATTTGCCAAAGCCAATCCCCAGGTTGCACAGTACCTCGGCATGATGCCCGATGGCGTTCTGGATCCTTTTGTCGAACGTTTACTGGAAGGTACGGCTTTCCTCAGTGCGCGCGTGCATGAGCGCCTTAATAATGAGCAACCGGAAGTTGCCATCCAGATGATAAACCGGCTGGCACCGTTCTGGTTTACCCCGCTGCCATCCATTGCCACCATTGCGCTGGAGCCTGATCTGACCTCCCCTCAGTGGCATGCCAATGTCACCTTGCCGCGGGGCAGTAAACTGAGCCTGCATGATCCCTCTCTCGGTCATAAGCACGCCACGTTCACCACAGGAAAAGACCTTAATATTCAGCCGCTTATTATTGACAGCGCCGAATGTGCAACTACGCCGTCCGCCAGGCTGCCGCAATCTGTGCTGCAATGTATGCAGGATGGCAAAGCCCATATTTCACTGAATCTGAATACACAAGGTGTGGTTGCGTTATCAGAACTGAATTTTTCACCGATGGTACTGACTTTTGCCGGTGATATTGTTCACGCCAACCAATTACTGGCCGCAATACAAAACGATACTCTGCGGGTCATTTTATGGAGCAAAAATGATGATAAAACACCGTTTATGCTTGTGCTTGATCCGACACACATCCGTCAGGGCGGATTACAGCCTGAGGATGCCCTGTTACCGGCAGTCACCGGTGAATTGCCGGGCAGCCGTTTGCTTCGCGAATACTTTGCCGCACCTTCCCGTTTTTTCAGCATTGAACTTCATGGTCTGAATCCTTTTTTACAGGCCGGTGATAAATGCACGGAATTTAATCTTATTTTTGTCCTGAATAAAACGCCGGTTAAATTAACCGACAATGTCAGGGCAACTGATTTCCGGCTGTTTGCCACACCGGTGATTAATTTATCACGCCGCCGCTGTAGCCCGGTTCTGATCAACGGAGAGCATACCGAGTACCCGATCATTGTTGATCAGCTCAATCCGGGCTTATATGAAATTCATCACCTGCTGAGTGTGGACGGATTACTGGCCGATAAGGGATATGTGCCATTCTCCCCGCTTCACGGTTATACCAAATTTGATGAACCCCCGGTATCCGCCGGTTACAGCCTGCGCCGTGTACGCCGCATCACCGATGAAAAATATGATAATGCACCGGTGATGCCAAGAGACAGCCTGTTTATCTCACTCTCAGCCGGACCGGTAAATTTCATGCCGGACAGTATTAAATCCCTGAGTATCGACGCGATGGTCTGTGACCGGTATCTCGATCCGTCCCGTTTACAGCAGCCCCGCATCCAGTTAGACAGCGCACTGCCGGTCGGACCGGCAGAAATACTACGGGCGCCGTCCCGTCCGCAGGGTGTGCCGGGCAGCGCAGACGCCTGGAAAGTCCTGCAACTTCTGTCCGTTAATCCGCTGCGCTACGCCCTGCCGGATTTTCCGGATAATACCGTGCTGCTCAAAGAGTGGCTTTCTCTGTTCTGCCCGCAGGATGACAGCCGTCAGCAGCGGCGTATCGAAAGTCTGCGCCAATCTTATGTCACTCACCGTTTTGAATGTAATCCGCTGCCCGGTCCGATCGCATGGAGCCGCGGCGCTGAAATTACCGTTGATTTACGGGGAAATCATCACAGTGACAAAGGCGCCTGGCTGTTCGCCCGGATCCTCCATCATGCGCTGGCAGAATATTGTGAACTGGGGCAAACCCTGCGTATGCAACTCAATATTGACGGTGAACCACTTGCACAATGGGAGCCGACCGGTGGCTGCTGATATGTTTGTTCCTGTCGCCGGGCTCAGTGCCCGTCAGGATTTTTTTGAAT