Homologs in group_2425

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19570 FBDBKF_19570 100.0 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_16725 NLDBIP_16725 100.0 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_16745 LHKJJB_16745 100.0 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_18870 HKOGLL_18870 100.0 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS18560 F4V73_RS18560 84.3 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS01425 PMI_RS01425 40.0 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_2425

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2425

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q92HV3 6.58e-08 48 35 0 62 4 RC0668 Uncharacterized HTH-type transcriptional regulator RC0668 Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q9ZD50 8.25e-08 48 35 0 62 4 RP497 Uncharacterized HTH-type transcriptional regulator RP497 Rickettsia prowazekii (strain Madrid E)
P15017 2.52e-05 42 28 0 64 4 None Uncharacterized transcriptional regulator in ATPase CF(0) region Rhodospirillum rubrum
P96631 3.42e-05 41 36 1 69 1 immR HTH-type transcriptional regulator ImmR Bacillus subtilis (strain 168)
P0C5S2 4.01e-05 41 26 0 64 4 R00410 Uncharacterized HTH-type transcriptional regulator R00410 Rhizobium meliloti (strain 1021)
A6U5H5 4.01e-05 41 26 0 64 4 Smed_0045 Uncharacterized HTH-type transcriptional regulator Smed_0045 Sinorhizobium medicae (strain WSM419)
O34647 0.000131 40 37 1 59 4 yobD Uncharacterized HTH-type transcriptional regulator YobD Bacillus subtilis (strain 168)
P23789 0.000276 39 34 1 58 1 xre HTH-type transcriptional regulator Xre Bacillus subtilis (strain 168)
P55360 0.000573 38 27 0 70 4 NGR_a00350 Uncharacterized HTH-type transcriptional regulator y4aM Sinorhizobium fredii (strain NBRC 101917 / NGR234)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_16515
Feature type CDS
Gene hipB
Product Transcriptional regulator, contains XRE-family HTH domain
Location 19902 - 20114 (strand: -1)
Length 213 (nucleotides) / 70 (amino acids)

Contig

Accession ZDB_229
Length 57314 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2425
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MFIGGKIKCQRLKNCLTGKELSIKINISQQQLSRYETGASLIPLDKLLMLADVLNISVSYFFDEMGCDEE

Flanking regions ( +/- flanking 50bp)

ACCGTTTATCTTCATAATTTATGACAATATATGATAAATATGAGTTGGCAATGTTTATTGGCGGCAAAATAAAATGTCAGCGACTGAAAAACTGTCTGACAGGTAAAGAGCTTTCAATAAAAATTAATATCTCACAACAGCAGTTATCCCGTTATGAAACGGGAGCAAGCTTAATTCCTCTGGATAAACTGTTAATGCTTGCAGACGTCCTGAATATTAGTGTTAGTTATTTTTTTGATGAAATGGGTTGTGATGAAGAATAAGTTTAATTTGACAAACATTAATATATTATTGTTTAACCAGACTGACAGAT