Orthogroup:group_2425



Homologs in group_2425

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19570 FBDBKF_19570 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_16515 EHELCC_16515 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_16725 NLDBIP_16725 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_16745 LHKJJB_16745 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_18870 HKOGLL_18870 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS18560 F4V73_RS18560 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS01425 PMI_RS01425 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of group_2425 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2425 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2425

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2425.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hipB 5
2 - 2

Product

# Product Occurence
1 Transcriptional regulator, contains XRE-family HTH domain 5
2 helix-turn-helix transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1396 7 K Transcription (K) Transcriptional regulator, contains XRE-family HTH domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01381 7 Helix-turn-helix

Annotations of the 10 SwissProt hits

Annotation Number of occurrences
HTH-type transcriptional regulator ImmR 1
HTH-type transcriptional regulator Xre 1
Uncharacterized HTH-type transcriptional regulator R00410 1
Uncharacterized HTH-type transcriptional regulator RC0668 1
Uncharacterized HTH-type transcriptional regulator RP497 1
Uncharacterized HTH-type transcriptional regulator Smed_0045 1
Uncharacterized HTH-type transcriptional regulator YobD 1
Uncharacterized HTH-type transcriptional regulator y4aM 1
Uncharacterized HTH-type transcriptional regulator y4wC 1
Uncharacterized transcriptional regulator in ATPase CF(0) region 1

Protein length

Min length 70
Max length 94
Mean length (sd) 73.4 (9.1)
Median length 70.0

Protein length distribution