Homologs in group_417

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7 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18750 FBDBKF_18750 100.0 Morganella morganii S1 - Integrase
NLDBIP_15855 NLDBIP_15855 100.0 Morganella morganii S4 - Integrase
LHKJJB_15985 LHKJJB_15985 100.0 Morganella morganii S3 - Integrase
HKOGLL_15105 HKOGLL_15105 100.0 Morganella morganii S5 - Integrase
PMI_RS02285 PMI_RS02285 37.3 Proteus mirabilis HI4320 - tyrosine-type recombinase/integrase
PMI_RS04385 PMI_RS04385 72.4 Proteus mirabilis HI4320 - site-specific integrase
PMI_RS04655 PMI_RS04655 58.1 Proteus mirabilis HI4320 - phage integrase Arm DNA-binding domain-containing protein

Distribution of the homologs in the orthogroup group_417

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_417

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P27077 0.0 591 71 0 377 3 int Integrase Enterobacteria phage P21
P75969 5.68e-161 459 59 1 377 3 intE Prophage integrase IntE Escherichia coli (strain K12)
P16407 1.17e-75 241 38 9 379 3 int Integrase Escherichia phage HK022
P27078 1.56e-67 220 35 8 379 3 int Integrase Enterobacteria phage 434
P03700 5.48e-66 216 34 8 379 1 int Integrase Escherichia phage lambda

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_15325
Feature type CDS
Gene -
Product Integrase
Location 27491 - 28624 (strand: 1)
Length 1134 (nucleotides) / 377 (amino acids)

Contig

Accession ZDB_226
Length 116685 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_417
Orthogroup size 8
N. genomes 6

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Genomic region

Domains

PF00589 Phage integrase family
PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4974 Replication, recombination and repair (L) L Site-specific recombinase XerD

Protein Sequence

MAARPRSHNIIVPNLYCKLDKRNNKTYWQYKHPLTGKFYSLGTDEKEAKEVAIQANMIIAEQQTKQILSINDRLSGIKNARHGISVSVWLDKYLEIQNERVREGELKPNSLKQKNKPVNLFREYCGMLKLKDITALEIAEITDQVKAAGHNRMAQVVRMVLIDVFKEAQHAGHVPPGYNPAQATKQPRNRIKRERLSLEEWQAIFSQAEDYPHYLRCGMLLAVVTGQRLGDISDMKFSDVWDDMLHIEQEKTGVKLAIPLSLRCQAIGMSLREVITFCRDRVVSKYLVHYQHTTSQAQKGEKVTANTLTTTFRKARDKCGIKWDEGAAPTFHEMRSLSERLYRQQGINTKNLLGHKNQQQTDRYHDDRGKDWIKVLI

Flanking regions ( +/- flanking 50bp)

ACCTCAATTACCGGGCAATTCTGGCGATATGTTAAGAAGGATTTTGTCTGATGGCTGCGAGACCACGCTCTCATAATATCATTGTCCCTAATTTGTACTGCAAACTTGATAAGCGAAACAACAAGACATACTGGCAGTACAAACATCCGTTGACAGGTAAATTTTACAGCCTGGGTACCGATGAGAAAGAAGCAAAGGAAGTCGCTATTCAGGCAAATATGATAATTGCTGAACAACAAACAAAACAAATACTGAGTATTAATGATCGTCTGTCAGGAATTAAAAACGCCAGACACGGGATCAGTGTCAGTGTATGGCTTGATAAATACCTCGAAATTCAGAATGAAAGAGTACGTGAAGGTGAACTAAAACCTAACTCACTGAAGCAGAAAAATAAACCGGTAAATTTATTCCGGGAATACTGCGGAATGCTGAAACTTAAAGATATTACCGCACTGGAAATAGCAGAAATCACAGATCAGGTTAAAGCAGCCGGTCATAACCGAATGGCTCAGGTTGTCAGAATGGTTCTGATCGACGTATTCAAAGAAGCCCAGCATGCCGGTCACGTACCTCCGGGATATAACCCGGCGCAGGCAACCAAACAGCCACGAAACAGAATAAAGCGCGAACGGCTTTCACTGGAAGAATGGCAGGCGATATTCAGCCAGGCGGAGGATTACCCCCACTATCTGAGATGCGGAATGCTGTTGGCTGTCGTAACAGGACAGCGTCTGGGAGATATTTCTGATATGAAGTTTTCGGATGTATGGGATGACATGCTCCATATCGAGCAGGAAAAAACCGGCGTAAAATTGGCTATCCCTCTCTCACTAAGATGCCAGGCGATAGGTATGTCATTACGCGAAGTTATTACTTTCTGCCGTGATCGTGTTGTCAGTAAATACTTAGTTCATTATCAGCACACCACATCACAGGCTCAAAAAGGAGAAAAAGTAACAGCCAATACCCTGACTACAACTTTCCGGAAAGCCAGGGATAAATGCGGAATAAAATGGGATGAAGGAGCAGCACCGACATTTCATGAAATGCGGTCATTATCGGAGCGTTTATACCGGCAACAGGGAATTAACACCAAAAATCTTCTGGGCCATAAAAATCAGCAGCAAACCGATAGATATCATGACGATCGTGGCAAAGATTGGATAAAGGTGTTGATATAATATTATATTGGCCCATAGTTAAACTCGCATATCTGTCTTCCAAACTGCAT