Homologs in group_70

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12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08050 FBDBKF_08050 100.0 Morganella morganii S1 fdnI formate dehydrogenase-N subunit gamma
FBDBKF_16130 FBDBKF_16130 48.8 Morganella morganii S1 fdoI formate dehydrogenase cytochrome b556 subunit
EHELCC_16165 EHELCC_16165 48.8 Morganella morganii S2 fdoI formate dehydrogenase cytochrome b556 subunit
NLDBIP_14325 NLDBIP_14325 100.0 Morganella morganii S4 fdnI formate dehydrogenase-N subunit gamma
NLDBIP_17175 NLDBIP_17175 48.8 Morganella morganii S4 fdoI formate dehydrogenase cytochrome b556 subunit
LHKJJB_08525 LHKJJB_08525 100.0 Morganella morganii S3 fdnI formate dehydrogenase-N subunit gamma
LHKJJB_17095 LHKJJB_17095 48.8 Morganella morganii S3 fdoI formate dehydrogenase cytochrome b556 subunit
HKOGLL_08075 HKOGLL_08075 100.0 Morganella morganii S5 fdnI formate dehydrogenase-N subunit gamma
HKOGLL_16745 HKOGLL_16745 48.8 Morganella morganii S5 fdoI formate dehydrogenase cytochrome b556 subunit
F4V73_RS12945 F4V73_RS12945 92.2 Morganella psychrotolerans fdnI formate dehydrogenase-N subunit gamma
F4V73_RS17485 F4V73_RS17485 49.8 Morganella psychrotolerans fdoI formate dehydrogenase cytochrome b556 subunit
PMI_RS15385 PMI_RS15385 50.0 Proteus mirabilis HI4320 fdoI formate dehydrogenase cytochrome b556 subunit

Distribution of the homologs in the orthogroup group_70

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_70

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AEK9 8.88e-125 354 81 0 213 3 fdnI Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit Shigella flexneri
P0AEK7 8.88e-125 354 81 0 213 1 fdnI Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit Escherichia coli (strain K12)
P0AEK8 8.88e-125 354 81 0 213 3 fdnI Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit Escherichia coli O157:H7
P44451 4.89e-78 237 51 0 206 3 fdxI Formate dehydrogenase, cytochrome b556 subunit Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AEL0 1.83e-66 206 46 2 212 1 fdoI Formate dehydrogenase, cytochrome b556(fdo) subunit Escherichia coli (strain K12)
P0AEL1 1.83e-66 206 46 2 212 3 fdoI Formate dehydrogenase, cytochrome b556(fdo) subunit Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEL2 1.83e-66 206 46 2 212 3 fdoI Formate dehydrogenase, cytochrome b556(fdo) subunit Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_13880
Feature type CDS
Gene fdnI
Product formate dehydrogenase-N subunit gamma
Location 120479 - 121135 (strand: -1)
Length 657 (nucleotides) / 218 (amino acids)

Contig

Accession ZDB_223
Length 138954 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_70
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF01292 Prokaryotic cytochrome b561

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2864 Energy production and conversion (C) C Cytochrome b subunit of formate dehydrogenase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08350 formate dehydrogenase-N, gamma subunit Two-component system -

Protein Sequence

MSKKSKMIVRTKFIDRACHWTVVICFFLVSLSGIALFFPTLQWLTETFGTPAMGRILHPFFGVLIFVVLMFMFFRFVKHNIPEREDLPWIKNIIEVLKGNEHHVARVGKYNAGQKMMFWSIMSMIFVLLATGIIIWRPYFAHYFPMWMIRWSLLIHATAAIVLIHAILIHMYMAFWVKGSIKGMVEGKVSRRWAKKHHPRWYEEVEAEEAAEEAKQKK

Flanking regions ( +/- flanking 50bp)

GATCGGCCCGAACAAAGAGACGGACGATGAGGAAGAGGAGGAAACTCACCATGAGTAAGAAAAGCAAAATGATCGTCCGCACGAAGTTTATTGATCGTGCCTGTCACTGGACAGTGGTGATCTGCTTTTTCCTGGTCTCCTTATCCGGTATTGCGCTGTTCTTCCCGACACTGCAATGGCTGACGGAAACTTTCGGGACGCCGGCAATGGGGCGTATTCTGCACCCGTTCTTTGGTGTGCTGATTTTCGTCGTGCTGATGTTTATGTTTTTCCGCTTCGTTAAGCACAACATCCCGGAAAGAGAAGATCTGCCGTGGATTAAAAACATTATCGAAGTGCTGAAAGGCAATGAGCATCATGTGGCGCGTGTCGGTAAATACAACGCCGGACAGAAAATGATGTTCTGGAGCATTATGAGCATGATCTTCGTCCTGCTTGCCACCGGGATCATCATCTGGCGTCCGTACTTTGCACACTACTTCCCGATGTGGATGATCCGCTGGAGTCTGCTGATCCACGCAACGGCGGCTATCGTCCTGATCCACGCCATCCTGATCCATATGTATATGGCCTTCTGGGTGAAAGGATCCATCAAAGGCATGGTGGAAGGTAAAGTCAGCCGCCGCTGGGCGAAGAAACATCACCCGCGCTGGTATGAAGAAGTGGAAGCCGAAGAAGCTGCTGAGGAAGCGAAGCAGAAGAAGTAATCGTCACCGGCTTTTAACTGTGAACTGCGCCGCAAACGTTCAATGCAACG