Homologs in group_318

Help

7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09350 FBDBKF_09350 100.0 Morganella morganii S1 sctC type III secretion system outer membrane ring subunit SctC
NLDBIP_10405 NLDBIP_10405 100.0 Morganella morganii S4 sctC type III secretion system outer membrane ring subunit SctC
LHKJJB_10950 LHKJJB_10950 100.0 Morganella morganii S3 sctC type III secretion system outer membrane ring subunit SctC
HKOGLL_14010 HKOGLL_14010 100.0 Morganella morganii S5 sctC type III secretion system outer membrane ring subunit SctC
F4V73_RS08365 F4V73_RS08365 35.0 Morganella psychrotolerans sctC type III secretion system outer membrane ring subunit SctC
F4V73_RS10615 F4V73_RS10615 69.5 Morganella psychrotolerans sctC type III secretion system outer membrane ring subunit SctC
PMI_RS13285 PMI_RS13285 46.1 Proteus mirabilis HI4320 sctC type III secretion system outer membrane ring subunit SctC

Distribution of the homologs in the orthogroup group_318

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_318

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P35672 5.04e-110 342 37 6 496 1 sctC1 SPI-1 type 3 secretion system secretin Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q55293 2.68e-103 325 37 8 498 3 sctC Type 3 secretion system secretin Shigella sonnei
Q04641 1.35e-102 323 37 8 498 1 sctC Type 3 secretion system secretin Shigella flexneri
Q01244 1.86e-71 242 30 10 491 1 sctC Type 3 secretion system secretin Yersinia enterocolitica
Q56974 4.67e-71 241 30 10 491 1 sctC Type 3 secretion system secretin Yersinia pestis
D0ZWR9 5.1e-42 160 27 13 459 2 sctC2 SPI-2 type 3 secretion system secretin Salmonella typhimurium (strain 14028s / SGSC 2262)
Q52498 3.74e-40 156 24 12 560 3 sctC Type 3 secretion system secretin Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
Q01723 1.23e-29 127 31 4 262 3 sctC Type 3 secretion system secretin Pseudomonas syringae pv. syringae
Q01723 3.4e-07 57 25 3 164 3 sctC Type 3 secretion system secretin Pseudomonas syringae pv. syringae
P80151 1.13e-28 123 23 16 576 3 sctC Type 3 secretion system secretin Xanthomonas euvesicatoria
P31780 4.98e-19 94 27 6 279 1 exeD Secretin ExeD Aeromonas hydrophila
Q01565 1.4e-17 89 26 10 322 1 outD Secretin OutD Dickeya dadantii (strain 3937)
P45778 9.59e-17 87 26 6 281 3 exeD Secretin ExeD Aeromonas salmonicida
P34749 5.11e-16 84 27 9 264 3 hofQ DNA utilization protein HofQ Escherichia coli (strain K12)
P15644 7.83e-15 81 25 8 288 1 pulD Secretin PulD Klebsiella pneumoniae
P31700 2.53e-14 79 25 10 331 3 outD Secretin OutD Dickeya chrysanthemi
P45758 3.28e-14 79 26 9 296 1 gspD Putative secretin GspD Escherichia coli (strain K12)
P31701 3.71e-14 79 27 8 280 3 outD Secretin OutD Pectobacterium carotovorum subsp. carotovorum
E3PJ86 1.67e-12 73 23 11 355 1 gspD2 Secretin GspD 2 Escherichia coli O78:H11 (strain H10407 / ETEC)
Q9JVW4 1.12e-11 71 25 8 281 1 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
P35818 1.18e-11 71 25 6 276 1 xcpQ Secretin XcpQ Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q70M91 1.29e-11 71 25 8 281 1 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q9ZHF3 1.3e-11 71 25 8 281 3 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria meningitidis serogroup B / serotype 15 (strain H44/76)
Q5FAD2 5.24e-11 68 24 8 281 3 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
P03668 2.43e-10 66 24 5 240 3 None Putative assembly protein ORF430 Pseudomonas phage Pf3
P31772 2.29e-09 63 26 4 206 3 comE Competence protein E Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P15420 3.9e-09 62 23 9 289 3 IV Virion export protein Enterobacteria phage I2-2
P34750 3.18e-08 60 26 3 165 1 pilQ Fimbrial assembly protein PilQ Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P03667 1.56e-07 57 23 10 292 3 IV Virion export protein Salmonella phage IKe
Q9RW95 2.55e-07 57 23 9 256 1 DR_0774 Probable type IV piliation system protein DR_0774 Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
P45779 2.6e-07 57 33 3 119 1 epsD Secretin GspD Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P55702 8.76e-07 55 24 5 233 3 NGR_a00790 Uncharacterized protein y4xJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P03665 3.11e-06 53 22 6 271 3 IV Virion export protein Enterobacteria phage M13
P03664 4.19e-06 53 22 6 271 3 IV Virion export protein Enterobacteria phage fd
P03666 4.7e-06 52 22 6 271 1 IV Virion export protein Enterobacteria phage f1
O80300 1.02e-05 51 20 9 288 3 IV Virion export protein Escherichia phage If1
P29041 8.08e-05 49 20 8 296 1 xpsD Secretin XpsD Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
P55712 0.000149 47 24 1 133 4 nolW Nodulation protein NolW Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P33212 0.000159 47 24 1 133 4 nolW Nodulation protein NolW Rhizobium fredii
P35819 0.00032 47 22 10 318 3 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria gonorrhoeae

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_10060
Feature type CDS
Gene sctC
Product type III secretion system outer membrane ring subunit SctC
Location 43139 - 44764 (strand: 1)
Length 1626 (nucleotides) / 541 (amino acids)

Contig

Accession ZDB_219
Length 213167 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_318
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF00263 Bacterial type II and III secretion system protein
PF03958 Bacterial type II/III secretion system short domain
PF21304 SPI-1 type 3 secretion system secretin, N0 domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1450 Intracellular trafficking, secretion, and vesicular transport (U) U Type II secretory pathway component GspD/PulD (secretin)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K22504 type III secretion system outer membrane ring protein - -

Protein Sequence

MRLKNSTGGVFCLFFCLFSLPVMAEQTLLYEKKPPQQAQYVAKETRLDHFFDALAGKLDVIIISSDAVKKKKISGTFDLSDPQAALSQMLKTMALVSYRENRTLYIYSSNEVESSILTLNAVTRNELTTFLKQTGLFDAQYPLTSDRQQRILYVTAPPRYLALIRSAADALEAQYSVQEQGITPEDEHIQLVKLEHSFVQDREITSRGKSLILPGVASALRELLDSGPAAKTGLVPQDAGQDDIQPAETVWLGGERVRIVPLQGENSLLLKGNRNALHLINQLIRQLDTAKPQIELSLWIIDVSKNEADQLGINWQADYGTGKMKVAFNFSELNQFTGFSFFSKIRALSAKGQANMVSRPIILTQDNTPAIFDNNTTFYSKLQGERTSSLESITYGTKVSVTPRIANQRKSVEMIIELEDGAQKKDADGAGGEDALPVINRTNISTIARVAQGNTLLIGGYTRENTHRHNDKIPLLGDIPLAGRLFQFESVKTEKMVRLFLLQPRILQQDFFSDTEITGHIPFNYKNKQGIKMIQKLKQDY

Flanking regions ( +/- flanking 50bp)

AATCAAAATATTATTTGGCATGTCTCCCCGGAAAATAAGGAATTTAAATCATGCGGTTAAAAAATAGCACCGGGGGGGTGTTCTGCCTTTTTTTCTGTCTGTTTTCTTTGCCGGTCATGGCGGAACAAACACTGTTATACGAAAAAAAACCGCCGCAACAGGCGCAGTATGTGGCGAAAGAAACACGGCTGGATCATTTTTTTGATGCGCTGGCAGGAAAGCTGGATGTCATAATTATTTCGTCTGATGCGGTGAAAAAGAAGAAGATCTCCGGCACTTTTGATTTATCCGACCCGCAGGCGGCGCTGTCGCAGATGCTGAAAACCATGGCGCTGGTGTCATACCGGGAAAACCGCACACTCTATATTTACAGCAGCAATGAAGTTGAATCTTCCATACTGACGCTGAATGCGGTAACCCGCAATGAACTGACGACTTTTCTGAAACAAACCGGGCTGTTTGATGCGCAATACCCGCTGACATCTGACCGGCAGCAGCGGATTTTGTATGTAACGGCTCCCCCGCGCTATCTGGCACTGATCCGTTCTGCGGCGGACGCACTGGAGGCACAGTACAGTGTGCAGGAGCAGGGAATTACGCCGGAAGATGAGCATATTCAGCTGGTTAAGCTGGAACATAGTTTTGTGCAGGACCGGGAAATTACCTCACGGGGGAAAAGCCTGATACTCCCGGGAGTGGCGTCCGCATTGCGGGAGTTACTGGATTCCGGACCTGCGGCAAAAACCGGACTGGTACCGCAGGATGCTGGACAGGACGATATTCAGCCGGCTGAAACTGTCTGGCTGGGCGGTGAGCGGGTGCGGATTGTGCCGCTGCAGGGGGAAAACAGCCTGCTGTTAAAAGGGAACCGTAATGCACTGCACTTAATCAATCAGCTGATCAGACAACTGGATACTGCCAAACCGCAAATCGAGTTATCACTGTGGATTATTGATGTATCAAAAAATGAAGCTGACCAGCTGGGGATCAACTGGCAGGCAGATTACGGTACAGGAAAAATGAAAGTAGCTTTTAATTTCAGTGAGCTTAATCAGTTCACCGGTTTTTCTTTTTTCAGCAAGATCAGAGCATTGTCCGCAAAGGGACAAGCCAATATGGTGTCCCGTCCGATTATTCTGACTCAGGATAACACCCCGGCGATTTTTGATAATAACACCACATTTTACAGCAAGTTACAGGGCGAGAGAACATCATCTCTGGAAAGCATCACTTACGGCACAAAGGTGAGTGTGACACCGCGGATCGCCAATCAGCGGAAATCCGTGGAGATGATTATTGAGCTTGAAGACGGCGCACAGAAAAAGGACGCTGACGGAGCAGGCGGTGAAGATGCCCTGCCGGTGATTAACCGCACGAATATCAGCACAATAGCCAGAGTCGCACAGGGAAATACACTGCTGATTGGCGGCTACACGCGGGAAAATACCCATCGCCATAACGATAAAATTCCGCTGCTGGGTGATATCCCGCTGGCAGGGCGGTTGTTTCAGTTTGAATCAGTGAAGACAGAAAAAATGGTCCGGCTTTTTTTGTTGCAGCCCCGTATTCTGCAACAGGATTTTTTCAGCGATACAGAAATTACCGGACATATTCCGTTTAATTATAAGAATAAACAAGGTATTAAGATGATTCAAAAACTGAAGCAGGACTATTGATATGATAAATGGTTTACCCGGCGCACCGGTGTTCAGTCCGTTTGCGGCAC