COG1450


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1450, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Type II secretory pathway component GspD/PulD (secretin)
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG1450 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_318 FBDBKF_09350 101340 102965 -1 sctC type III secretion system outer membrane ring subunit SctC Morganella morganii S1
1 group_318 EHELCC_10060 43139 44764 1 sctC type III secretion system outer membrane ring subunit SctC Morganella morganii S2
2 group_318 NLDBIP_10405 21410 23035 1 sctC type III secretion system outer membrane ring subunit SctC Morganella morganii S4
3 group_318 LHKJJB_10950 168493 170118 -1 sctC type III secretion system outer membrane ring subunit SctC Morganella morganii S3
4 group_318 HKOGLL_14010 101794 103419 -1 sctC type III secretion system outer membrane ring subunit SctC Morganella morganii S5
5 group_318 F4V73_RS08365 1732129 1733670 1 sctC type III secretion system outer membrane ring subunit SctC Morganella psychrotolerans
6 group_318 F4V73_RS10615 252229 253896 1 sctC type III secretion system outer membrane ring subunit SctC Morganella psychrotolerans
7 group_318 PMI_RS13285 2947999 2949714 -1 sctC type III secretion system outer membrane ring subunit SctC Proteus mirabilis HI4320