Homologs in group_318

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09350 FBDBKF_09350 35.0 Morganella morganii S1 sctC type III secretion system outer membrane ring subunit SctC
EHELCC_10060 EHELCC_10060 35.0 Morganella morganii S2 sctC type III secretion system outer membrane ring subunit SctC
NLDBIP_10405 NLDBIP_10405 35.0 Morganella morganii S4 sctC type III secretion system outer membrane ring subunit SctC
LHKJJB_10950 LHKJJB_10950 35.0 Morganella morganii S3 sctC type III secretion system outer membrane ring subunit SctC
HKOGLL_14010 HKOGLL_14010 35.0 Morganella morganii S5 sctC type III secretion system outer membrane ring subunit SctC
F4V73_RS10615 F4V73_RS10615 34.6 Morganella psychrotolerans sctC type III secretion system outer membrane ring subunit SctC
PMI_RS13285 PMI_RS13285 32.1 Proteus mirabilis HI4320 sctC type III secretion system outer membrane ring subunit SctC

Distribution of the homologs in the orthogroup group_318

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_318

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q56974 8.52e-130 393 44 5 478 1 sctC Type 3 secretion system secretin Yersinia pestis
Q01244 9.34e-129 390 43 5 478 1 sctC Type 3 secretion system secretin Yersinia enterocolitica
D0ZWR9 4.64e-70 235 32 7 470 2 sctC2 SPI-2 type 3 secretion system secretin Salmonella typhimurium (strain 14028s / SGSC 2262)
P35672 2.33e-61 214 29 12 480 1 sctC1 SPI-1 type 3 secretion system secretin Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q55293 3.57e-48 178 30 9 458 3 sctC Type 3 secretion system secretin Shigella sonnei
Q04641 4.73e-48 177 30 9 458 1 sctC Type 3 secretion system secretin Shigella flexneri
Q52498 5.39e-45 169 24 12 578 3 sctC Type 3 secretion system secretin Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
Q01723 9.55e-36 144 34 5 264 3 sctC Type 3 secretion system secretin Pseudomonas syringae pv. syringae
Q01723 5.97e-19 94 31 4 192 3 sctC Type 3 secretion system secretin Pseudomonas syringae pv. syringae
P80151 7.86e-33 135 32 5 277 3 sctC Type 3 secretion system secretin Xanthomonas euvesicatoria
P80151 3.6e-11 69 24 4 179 3 sctC Type 3 secretion system secretin Xanthomonas euvesicatoria
P34749 3.99e-21 99 25 8 281 3 hofQ DNA utilization protein HofQ Escherichia coli (strain K12)
P34750 6.48e-18 90 23 8 310 1 pilQ Fimbrial assembly protein PilQ Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9JVW4 1.05e-16 87 28 10 297 1 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
P31772 1.17e-16 85 24 9 289 3 comE Competence protein E Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q70M91 1.17e-16 87 28 10 297 1 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q9ZHF3 1.18e-16 87 28 10 297 3 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria meningitidis serogroup B / serotype 15 (strain H44/76)
Q5FAD2 1.29e-16 86 28 9 296 3 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
P45778 2.52e-16 85 24 5 284 3 exeD Secretin ExeD Aeromonas salmonicida
P03668 8.65e-16 83 26 5 240 3 None Putative assembly protein ORF430 Pseudomonas phage Pf3
P31780 2.69e-15 82 23 6 285 1 exeD Secretin ExeD Aeromonas hydrophila
P35818 2.11e-14 79 29 12 291 1 xcpQ Secretin XcpQ Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q01565 5.07e-14 78 26 11 313 1 outD Secretin OutD Dickeya dadantii (strain 3937)
P31700 1.06e-13 77 24 6 286 3 outD Secretin OutD Dickeya chrysanthemi
P31701 5.11e-12 72 23 7 284 3 outD Secretin OutD Pectobacterium carotovorum subsp. carotovorum
P15644 5.89e-12 72 24 7 286 1 pulD Secretin PulD Klebsiella pneumoniae
Q9RW95 7.41e-10 65 24 8 282 1 DR_0774 Probable type IV piliation system protein DR_0774 Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
P55702 1.04e-09 64 23 6 241 3 NGR_a00790 Uncharacterized protein y4xJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P45779 2.11e-09 63 24 8 326 1 epsD Secretin GspD Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P33212 4e-09 60 30 1 123 4 nolW Nodulation protein NolW Rhizobium fredii
P45758 8.9e-09 61 23 9 289 1 gspD Putative secretin GspD Escherichia coli (strain K12)
P55712 9.1e-09 59 29 1 123 4 nolW Nodulation protein NolW Sinorhizobium fredii (strain NBRC 101917 / NGR234)
E3PJ86 1.77e-08 60 23 16 434 1 gspD2 Secretin GspD 2 Escherichia coli O78:H11 (strain H10407 / ETEC)
P35819 2.83e-07 57 25 10 272 3 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria gonorrhoeae
P15420 1.26e-06 54 21 8 254 3 IV Virion export protein Enterobacteria phage I2-2
P03665 4.03e-06 52 24 10 247 3 IV Virion export protein Enterobacteria phage M13
P03666 4.48e-06 52 24 9 248 1 IV Virion export protein Enterobacteria phage f1
P03664 4.68e-06 52 24 9 248 3 IV Virion export protein Enterobacteria phage fd
O80300 7.42e-06 52 21 9 255 3 IV Virion export protein Escherichia phage If1

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08365
Feature type CDS
Gene sctC
Product type III secretion system outer membrane ring subunit SctC
Location 1732129 - 1733670 (strand: 1)
Length 1542 (nucleotides) / 513 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_318
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00263 Bacterial type II and III secretion system protein
PF03958 Bacterial type II/III secretion system short domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1450 Intracellular trafficking, secretion, and vesicular transport (U) U Type II secretory pathway component GspD/PulD (secretin)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03219 type III secretion protein C Bacterial secretion system EHEC/EPEC pathogenicity signature, T3SS and effectors

Protein Sequence

MTYCAGTDFIRKKNYLTGRYLAGIVISLLFSVCQAASFTSDEPYSFIANNTPLAEVLKDFADNNDIQSDISPDITSFANGHLTADTATEFLDNLSRLYRLETYFYNNTLYVSKKNSNRTQNIRLKSLTTGQAQALLQETDIADNRWKMTTSSPDQLRLSGPPAYINFARLVIDAKENELSEQRRSPEQTIAIIPLKYSSAVDRVIQYRDSKITAPGVATILSRILSGPVHLPGYKSPEGQSTSQGVINADPTLNAIILRDIPEKITLYKELIRQLDIPTSRIEIALYIIDVDTQNAESLGIDWGGTLSSGNTKISISSTLSPQSSAIGTLLNQSGLNQLLANVHLLQSKGYARMVSRPTILTLENNPALIDHNETYYVKINGERVAELKSITYGTLLQLTPRIIRETKNTLLDMTLHIEDGNQKTGNSSDDAIPTISRTVIDTIARVELGQSLLIGGIYRDEERKTESRVPLLGDIPWLGALFRSETVQDRQAVRLFIIKPRIIDYGKPSAPL

Flanking regions ( +/- flanking 50bp)

TAATGAATTTTTGCATAAATGGTTGTATCAGAGAAATATCTGCCTGCAAGGTGACATATTGCGCTGGCACTGATTTCATCCGGAAAAAGAATTATCTGACAGGGCGTTATTTAGCAGGGATAGTAATATCCCTGCTTTTTTCTGTTTGTCAGGCCGCTTCTTTTACATCAGATGAACCCTACAGTTTTATTGCAAACAATACCCCACTCGCTGAGGTACTGAAAGATTTTGCAGACAACAATGACATTCAGTCAGACATCAGCCCTGATATTACCAGTTTTGCCAACGGACACCTGACAGCAGATACCGCGACAGAATTTTTGGATAATCTCTCCCGCCTTTACCGTCTGGAAACCTATTTTTATAACAATACATTATATGTCAGTAAAAAAAACAGTAACCGGACACAGAACATCCGGCTGAAATCGCTCACCACCGGACAGGCACAAGCACTGTTGCAGGAAACTGATATCGCAGATAACCGCTGGAAAATGACAACCAGCTCACCGGATCAGCTCCGGCTATCCGGCCCGCCTGCATATATTAATTTTGCCCGGTTGGTAATTGATGCCAAAGAAAATGAATTAAGTGAACAGCGTCGTTCCCCGGAACAAACTATTGCTATTATTCCTCTCAAATACAGTTCTGCCGTAGACCGGGTTATTCAATACCGGGACAGTAAGATAACCGCACCGGGTGTTGCCACTATTTTGTCGCGTATTCTTTCCGGTCCTGTTCATCTGCCGGGCTATAAATCGCCCGAAGGACAAAGTACATCTCAGGGTGTAATAAATGCCGACCCGACACTGAATGCCATTATCCTGCGTGATATACCGGAAAAAATCACCTTATATAAAGAATTAATCCGGCAGTTGGATATTCCGACATCACGAATAGAAATTGCGTTATATATTATCGATGTAGATACGCAAAATGCTGAATCCCTCGGTATTGACTGGGGCGGAACACTCAGTAGCGGAAATACAAAAATCAGTATTTCATCAACATTATCACCGCAGAGTTCGGCTATCGGTACATTACTTAATCAGAGCGGTCTGAATCAATTACTGGCAAATGTTCATCTGCTGCAAAGCAAAGGTTATGCCCGAATGGTATCACGCCCGACAATTCTGACCCTGGAAAACAATCCGGCACTGATCGACCATAATGAAACCTATTATGTCAAAATCAACGGTGAACGGGTTGCTGAATTAAAAAGCATCACCTACGGTACACTTTTGCAATTAACACCGCGCATTATCCGGGAAACAAAAAATACGCTGCTGGATATGACACTGCATATTGAAGATGGCAATCAAAAAACAGGAAATAGTAGTGATGATGCCATCCCGACTATCAGCCGGACCGTTATTGATACCATTGCGCGGGTTGAATTAGGACAATCACTGCTGATCGGCGGTATTTACCGTGATGAAGAACGGAAAACAGAATCACGGGTTCCGTTACTCGGTGATATTCCCTGGCTTGGCGCTCTGTTTCGCAGTGAAACAGTACAAGATCGCCAAGCCGTCAGGCTGTTTATTATCAAGCCCCGGATTATTGACTACGGCAAGCCTTCCGCCCCGTTATAAAACAACACTATACCCTTATTCATTCAAACTGCAGGTGCGTTGGGTATATA