Homologs in group_1834

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13595 FBDBKF_13595 100.0 Morganella morganii S1 bamC outer membrane protein assembly factor BamC
NLDBIP_08825 NLDBIP_08825 100.0 Morganella morganii S4 bamC outer membrane protein assembly factor BamC
LHKJJB_05440 LHKJJB_05440 100.0 Morganella morganii S3 bamC outer membrane protein assembly factor BamC
HKOGLL_05475 HKOGLL_05475 100.0 Morganella morganii S5 bamC outer membrane protein assembly factor BamC
F4V73_RS03170 F4V73_RS03170 90.0 Morganella psychrotolerans bamC outer membrane protein assembly factor BamC
PMI_RS07615 PMI_RS07615 62.4 Proteus mirabilis HI4320 bamC outer membrane protein assembly factor BamC

Distribution of the homologs in the orthogroup group_1834

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1834

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
C7BGW7 4.88e-151 431 59 0 347 3 bamC Outer membrane protein assembly factor BamC Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77)
D3VI76 6.29e-150 429 60 1 349 3 bamC Outer membrane protein assembly factor BamC Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / CCUG 14189 / LMG 1036 / NCIMB 9965 / AN6)
Q0WCK7 2.27e-125 367 55 0 347 3 bamC Outer membrane protein assembly factor BamC Yersinia pestis
P0A904 5.97e-120 352 52 3 348 3 bamC Outer membrane protein assembly factor BamC Shigella flexneri
P0A903 5.97e-120 352 52 3 348 1 bamC Outer membrane protein assembly factor BamC Escherichia coli (strain K12)
E8XP36 4.02e-113 335 47 0 347 3 bamC Outer membrane protein assembly factor BamC Rahnella sp. (strain Y9602)
Q9KQ48 3.24e-48 168 30 5 335 3 bamC Outer membrane protein assembly factor BamC Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
B7VIM1 6.85e-46 162 31 6 328 3 bamC Outer membrane protein assembly factor BamC Vibrio atlanticus (strain LGP32)
Q8EFT6 8.74e-25 106 26 13 358 3 bamC Outer membrane protein assembly factor BamC Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
E1SLW4 1.06e-24 106 27 12 371 3 bamC Outer membrane protein assembly factor BamC Ferrimonas balearica (strain DSM 9799 / CCM 4581 / KCTC 23876 / PAT)
A8FW15 1.57e-21 97 25 15 366 3 bamC Outer membrane protein assembly factor BamC Shewanella sediminis (strain HAW-EB3)
Q9CLZ8 6.34e-19 89 26 9 341 3 bamC Outer membrane protein assembly factor BamC Pasteurella multocida (strain Pm70)
H2FU77 9.7e-19 89 24 8 339 3 bamC Outer membrane protein assembly factor BamC Oceanimonas sp. (strain GK1 / IBRC-M 10197)
E6RM71 6.32e-18 87 25 15 363 3 bamC Outer membrane protein assembly factor BamC Pseudoalteromonas sp. (strain SM9913)
Q15SZ5 2.88e-15 79 21 9 337 3 bamC Outer membrane protein assembly factor BamC Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
A6VKA3 8.22e-13 72 22 9 313 3 bamC Outer membrane protein assembly factor BamC Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
A1SVX3 2.31e-10 64 25 18 374 3 bamC Outer membrane protein assembly factor BamC Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
C7RCP6 6.43e-07 54 23 14 366 3 bamC Outer membrane protein assembly factor BamC Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_08500
Feature type CDS
Gene bamC
Product outer membrane protein assembly factor BamC
Location 177274 - 178323 (strand: 1)
Length 1050 (nucleotides) / 349 (amino acids)

Contig

Accession ZDB_217
Length 250991 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1834
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06804 NlpB/DapX lipoprotein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3317 Cell wall/membrane/envelope biogenesis (M) M Outer membrane beta-barrel protein assembly factor BamC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07287 outer membrane protein assembly factor BamC - -

Protein Sequence

MATLLQKSKVTKLAGLSVVLLLAACSGDQNYKRQVSGDTSYLDAPQLQALNVPQGMILPLQSGQYDIPQVKQDGATGLALDIRPPVQTVSLLAGSRTETAGDASRLLLENSAENRTLWAQINRVLADRSVPVSQRDEAGGVIVTDWIVWQRADEDLPLQSRQRIKIEPAGSQVAVVVTSEGLKQGENPVTDKTEITRYNNLTLNELVDGLDRMRNAARQETNASQYAAPDVQSGSDKTGLPQIIVRAPFDVVWSRLPVVLESVGMKVGDRTRSTGNIEVTYKGLSSAEWSSLGMDDPSVAEGDYTLQVGDLDNRSSLQFISAKGKPLTQKENDEMVKALEAAFSKSSVK

Flanking regions ( +/- flanking 50bp)

GGCCGTGCCATGAAGACGGCGGGCATACGATAATATTTTAGGGAATCTGAATGGCAACACTACTGCAAAAATCAAAGGTTACGAAGCTCGCTGGTCTTTCCGTGGTTTTATTACTGGCAGCCTGCTCCGGCGATCAGAACTATAAGCGCCAGGTCAGCGGCGATACTTCGTACCTGGATGCGCCGCAGTTACAGGCGCTGAATGTTCCTCAGGGGATGATCCTGCCGTTACAGAGCGGCCAGTATGATATTCCTCAGGTTAAGCAGGATGGTGCGACCGGTCTGGCGCTGGACATCCGTCCGCCGGTACAGACTGTCAGCCTGTTAGCAGGTTCCCGTACTGAAACAGCAGGAGACGCAAGCCGTCTTCTGCTGGAGAATTCAGCGGAAAACAGAACGCTGTGGGCTCAGATCAACCGCGTTCTGGCCGATCGCTCAGTGCCGGTCAGCCAGCGTGATGAAGCCGGTGGCGTGATTGTCACTGACTGGATTGTCTGGCAGCGTGCGGATGAAGACCTGCCGTTACAGTCCCGCCAGCGCATCAAAATTGAACCGGCCGGTTCACAGGTGGCAGTTGTTGTGACCAGTGAAGGTCTGAAACAGGGTGAAAACCCGGTGACAGATAAAACGGAAATCACCCGTTATAACAACCTGACACTCAACGAGCTGGTGGACGGCCTTGACCGTATGCGTAATGCCGCGCGTCAGGAAACCAATGCGTCACAGTATGCGGCTCCGGACGTTCAGAGCGGCAGTGATAAAACCGGTCTGCCGCAGATTATTGTCCGCGCGCCGTTTGATGTGGTCTGGTCCCGTCTGCCGGTTGTGCTGGAAAGCGTCGGCATGAAAGTGGGTGACCGCACCCGTTCGACCGGGAATATTGAAGTGACATACAAAGGGCTGAGTTCTGCAGAGTGGAGCAGCCTGGGTATGGATGATCCGTCAGTGGCCGAAGGTGATTACACCTTACAGGTCGGTGACCTGGATAACCGCAGCAGCCTCCAGTTTATCAGTGCCAAAGGGAAACCGCTGACACAGAAAGAAAATGATGAAATGGTGAAAGCGCTGGAAGCGGCATTCAGCAAATCATCTGTAAAATAATATATTCACGCAACATATAAATGCGTAAATATAATTATCAGTACCGGTCA