COG3317


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3317, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Outer membrane beta-barrel protein assembly factor BamC
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG3317 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1834 FBDBKF_13595 96868 97917 -1 bamC outer membrane protein assembly factor BamC Morganella morganii S1
1 group_1834 EHELCC_08500 177274 178323 1 bamC outer membrane protein assembly factor BamC Morganella morganii S2
2 group_1834 NLDBIP_08825 177274 178323 1 bamC outer membrane protein assembly factor BamC Morganella morganii S4
3 group_1834 LHKJJB_05440 78836 79885 -1 bamC outer membrane protein assembly factor BamC Morganella morganii S3
4 group_1834 HKOGLL_05475 161865 162914 1 bamC outer membrane protein assembly factor BamC Morganella morganii S5
5 group_1834 F4V73_RS03170 676259 677311 1 bamC outer membrane protein assembly factor BamC Morganella psychrotolerans
6 group_1834 PMI_RS07615 1661064 1662110 -1 bamC outer membrane protein assembly factor BamC Proteus mirabilis HI4320