Homologs in group_1872

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13595 FBDBKF_13595 90.0 Morganella morganii S1 bamC outer membrane protein assembly factor BamC
EHELCC_08500 EHELCC_08500 90.0 Morganella morganii S2 bamC outer membrane protein assembly factor BamC
NLDBIP_08825 NLDBIP_08825 90.0 Morganella morganii S4 bamC outer membrane protein assembly factor BamC
LHKJJB_05440 LHKJJB_05440 90.0 Morganella morganii S3 bamC outer membrane protein assembly factor BamC
HKOGLL_05475 HKOGLL_05475 90.0 Morganella morganii S5 bamC outer membrane protein assembly factor BamC
PMI_RS07615 PMI_RS07615 62.4 Proteus mirabilis HI4320 bamC outer membrane protein assembly factor BamC

Distribution of the homologs in the orthogroup group_1872

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1872

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
C7BGW7 1.61e-154 440 59 0 347 3 bamC Outer membrane protein assembly factor BamC Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77)
D3VI76 2.04e-151 432 60 1 349 3 bamC Outer membrane protein assembly factor BamC Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / CCUG 14189 / LMG 1036 / NCIMB 9965 / AN6)
Q0WCK7 5.9e-127 370 55 0 347 3 bamC Outer membrane protein assembly factor BamC Yersinia pestis
P0A904 4.47e-116 343 50 3 348 3 bamC Outer membrane protein assembly factor BamC Shigella flexneri
P0A903 4.47e-116 343 50 3 348 1 bamC Outer membrane protein assembly factor BamC Escherichia coli (strain K12)
E8XP36 4.17e-111 330 46 0 347 3 bamC Outer membrane protein assembly factor BamC Rahnella sp. (strain Y9602)
Q9KQ48 4.73e-48 168 30 6 339 3 bamC Outer membrane protein assembly factor BamC Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
B7VIM1 1.47e-47 167 31 6 340 3 bamC Outer membrane protein assembly factor BamC Vibrio atlanticus (strain LGP32)
E1SLW4 9.26e-25 106 27 12 351 3 bamC Outer membrane protein assembly factor BamC Ferrimonas balearica (strain DSM 9799 / CCM 4581 / KCTC 23876 / PAT)
Q8EFT6 4.42e-24 104 25 11 356 3 bamC Outer membrane protein assembly factor BamC Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
Q9CLZ8 1.83e-20 94 27 12 341 3 bamC Outer membrane protein assembly factor BamC Pasteurella multocida (strain Pm70)
E6RM71 4.99e-19 90 26 15 363 3 bamC Outer membrane protein assembly factor BamC Pseudoalteromonas sp. (strain SM9913)
A8FW15 4.57e-18 87 25 16 374 3 bamC Outer membrane protein assembly factor BamC Shewanella sediminis (strain HAW-EB3)
H2FU77 3.83e-17 84 24 9 334 3 bamC Outer membrane protein assembly factor BamC Oceanimonas sp. (strain GK1 / IBRC-M 10197)
Q15SZ5 1.24e-14 77 21 12 341 3 bamC Outer membrane protein assembly factor BamC Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
A6VKA3 1.94e-12 70 21 7 310 3 bamC Outer membrane protein assembly factor BamC Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
A1SVX3 4.47e-11 67 24 15 351 3 bamC Outer membrane protein assembly factor BamC Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
C7RCP6 8.03e-07 53 19 9 366 3 bamC Outer membrane protein assembly factor BamC Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03170
Feature type CDS
Gene bamC
Product outer membrane protein assembly factor BamC
Location 676259 - 677311 (strand: 1)
Length 1053 (nucleotides) / 350 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1872
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06804 NlpB/DapX lipoprotein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3317 Cell wall/membrane/envelope biogenesis (M) M Outer membrane beta-barrel protein assembly factor BamC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07287 outer membrane protein assembly factor BamC - -

Protein Sequence

MATLLQKSKVMKVAGLSVVFLLAACSGDQRYKRQVSGDTSYLDAPQLQTLNVPQGMILPLQSGQYDIPQVKHEGATGLALDIRPPVQTVSLLAGSRTETAADSSRLLLENSAENKTLWAQINRVLADRSVPVSQRNEATGEIVTDWIVWQRADEDLPLQSRQRIKIEPAGSQLAVVVTSEGLKQGENAVTDKVEITRYNNLTLNEVVDGLDRLRNAARQDSNAGQFAVLEVQSGSDKTGLPQIVVRAPFDVVWSRLPGALESVGMKVGDRTRSTGNVEVTYKGLSSAEWSSMGMDDPSVTEGDYTLQVGDLNNRSSLQFISAKGKPLTQKENDEMVKALEAAFSKAAMKQ

Flanking regions ( +/- flanking 50bp)

GGGCAAGCCATGAAGACGGCCGGCATACGATAATACTTTAGGGAATCTGAATGGCAACACTACTGCAAAAATCAAAGGTTATGAAGGTCGCTGGCCTCTCCGTGGTTTTTTTACTGGCAGCCTGCTCCGGCGATCAGCGCTATAAGCGCCAGGTCAGCGGTGATACCTCGTATCTGGATGCGCCGCAGTTGCAGACGCTGAATGTCCCTCAGGGGATGATCCTGCCGTTACAAAGCGGGCAGTATGATATTCCTCAGGTTAAGCATGAAGGTGCGACCGGTCTGGCGCTGGATATTCGTCCGCCGGTACAGACCGTCAGCCTGTTAGCAGGTTCCCGTACTGAAACCGCAGCAGATTCCAGCCGTCTTCTGCTGGAAAATTCGGCGGAAAACAAAACATTATGGGCGCAGATTAACCGCGTTCTGGCAGACCGCTCCGTGCCGGTCAGTCAGCGCAATGAAGCCACCGGTGAAATTGTGACTGACTGGATTGTCTGGCAGCGTGCAGATGAAGATCTGCCGTTGCAGTCCCGCCAGCGCATCAAAATCGAACCGGCAGGCTCACAGCTTGCGGTTGTTGTGACCAGTGAAGGCCTGAAGCAGGGTGAAAACGCGGTAACGGATAAAGTAGAAATTACCCGTTACAACAATCTGACACTCAATGAAGTGGTTGATGGTCTGGATCGCCTGCGCAATGCTGCCCGTCAGGACAGCAATGCCGGTCAGTTTGCTGTTCTGGAAGTTCAGAGCGGCAGCGATAAAACCGGTCTGCCGCAGATTGTTGTGCGCGCACCATTTGATGTGGTCTGGTCACGCCTTCCGGGCGCACTGGAAAGTGTCGGGATGAAAGTGGGCGACCGTACCCGCTCCACAGGTAATGTTGAAGTCACTTATAAAGGACTCAGCTCTGCGGAATGGAGCAGCATGGGAATGGACGATCCTTCTGTTACAGAAGGGGATTACACCCTGCAGGTCGGTGACCTGAATAACCGCAGCAGCCTGCAATTCATCAGTGCCAAAGGGAAACCTCTGACACAGAAAGAAAATGATGAAATGGTTAAAGCGCTGGAAGCGGCTTTCAGTAAAGCTGCAATGAAGCAATAATTATCACCGGTATCGATATACCCTTATTCATTCAAACCGCAGGTTCATTG