Homologs in group_1600

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10045 FBDBKF_10045 100.0 Morganella morganii S1 holA DNA polymerase III subunit delta
NLDBIP_04845 NLDBIP_04845 100.0 Morganella morganii S4 holA DNA polymerase III subunit delta
LHKJJB_13785 LHKJJB_13785 100.0 Morganella morganii S3 holA DNA polymerase III subunit delta
HKOGLL_12750 HKOGLL_12750 100.0 Morganella morganii S5 holA DNA polymerase III subunit delta
F4V73_RS00290 F4V73_RS00290 89.6 Morganella psychrotolerans holA DNA polymerase III subunit delta
PMI_RS02125 PMI_RS02125 64.5 Proteus mirabilis HI4320 holA DNA polymerase III subunit delta

Distribution of the homologs in the orthogroup group_1600

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1600

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P28630 1.95e-148 425 65 0 334 1 holA DNA polymerase III subunit delta Escherichia coli (strain K12)
P43747 4.12e-76 241 43 3 332 3 holA DNA polymerase III subunit delta Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57520 1.12e-49 172 26 2 333 3 holA DNA polymerase III subunit delta Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9B8 6.03e-39 144 26 1 317 3 holA DNA polymerase III subunit delta Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89AC0 3.57e-26 109 22 1 328 3 holA DNA polymerase III subunit delta Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_04845
Feature type CDS
Gene holA
Product DNA polymerase III subunit delta
Location 294991 - 296034 (strand: 1)
Length 1044 (nucleotides) / 347 (amino acids)
In genomic island -

Contig

Accession ZDB_214
Length 335585 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1600
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06144 DNA polymerase III, delta subunit
PF14840 Processivity clamp loader gamma complex DNA pol III C-term

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1466 Replication, recombination and repair (L) L DNA polymerase III, delta subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02340 DNA polymerase III subunit delta [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Protein Sequence

MIKVSPEQLITQLRSGLRERYLLWGNEPLLLQESRDAIRHAAQGQGFDEHFTFSLEQHTDWDAIFSVCRSLSLFAGRQTLTLYLPENGPNAAMGEQLLRLAGQLHPDLLLILRGHKLTKAQENSAWFKALAQDGVYIACMTPELNRLPQWVTARAALLQLQPDEQAVRLLCYCYEGNLLALSQALSRLALIYPDGKLTLPRVEAAVNDAAHFTPYHWVDALLAGKSKRACHILTQLLAEDNEPVILLRTVQREVMQLLTLQRESRNQPLRTLFDKHRIWQNRRGMITEALDRLDAHTLLVAISLITRIEIRLKQDYGQSVSDDLLTLTLLLSGKAQTGQILYDEQRG

Flanking regions ( +/- flanking 50bp)

CAGAAACAGGCTGAAAATGCCGAAGCGGCTGAGATTGTCGCACCGAAGGCATGATAAAAGTTTCACCTGAGCAACTCATCACGCAGCTCCGTTCGGGGCTGCGTGAACGTTACCTCCTCTGGGGGAACGAGCCGTTACTGCTTCAGGAATCCCGGGATGCTATCCGCCATGCGGCGCAGGGACAGGGATTTGACGAGCACTTCACCTTTTCACTTGAACAACATACTGACTGGGATGCGATTTTTTCTGTCTGCCGGTCACTCAGTCTGTTTGCCGGACGGCAGACACTCACCCTGTATCTGCCGGAAAACGGCCCCAATGCCGCAATGGGCGAACAGCTTCTCCGGCTGGCCGGGCAGTTACATCCGGATCTGCTGCTGATACTGCGCGGCCATAAACTGACCAAAGCCCAGGAAAACAGCGCCTGGTTTAAAGCGCTGGCACAGGATGGCGTCTATATCGCCTGCATGACCCCGGAACTGAACCGGCTGCCGCAGTGGGTCACCGCGCGGGCAGCTCTGTTACAACTGCAACCGGATGAACAGGCTGTCCGCCTGCTCTGCTATTGCTACGAAGGCAATCTGCTGGCGCTGTCACAGGCACTCTCCCGGCTGGCGCTGATCTATCCCGACGGCAAACTCACCCTGCCCCGCGTGGAAGCAGCGGTGAATGATGCGGCACACTTTACCCCGTATCACTGGGTGGATGCCCTGCTGGCCGGAAAAAGTAAACGCGCCTGTCACATCCTGACTCAGCTGCTGGCGGAAGATAACGAGCCGGTGATCCTGCTGCGCACCGTCCAGCGGGAAGTGATGCAGTTACTGACATTACAGCGCGAAAGCCGAAACCAGCCACTGCGCACACTGTTTGACAAGCACCGTATCTGGCAGAACCGCCGCGGTATGATAACCGAAGCACTGGATCGCCTTGATGCGCATACCCTGCTGGTGGCGATATCCCTGATCACCCGTATTGAAATCCGCCTCAAGCAGGATTACGGACAATCCGTAAGTGATGACTTACTGACACTGACACTGCTCCTGAGCGGTAAAGCACAGACAGGACAGATCCTCTATGACGAACAACGCGGATAACCGGATTCTGGCGCTGTACGGCGGCACATTTGACCCAATCCACCAGGCGC