Orthogroup:group_1600



Homologs in group_1600

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10440 FBDBKF_10440 Morganella morganii S1 trpS tryptophan--tRNA ligase
EHELCC_14775 EHELCC_14775 Morganella morganii S2 trpS tryptophan--tRNA ligase
NLDBIP_14605 NLDBIP_14605 Morganella morganii S4 trpS tryptophan--tRNA ligase
LHKJJB_14740 LHKJJB_14740 Morganella morganii S3 trpS tryptophan--tRNA ligase
HKOGLL_13360 HKOGLL_13360 Morganella morganii S5 trpS tryptophan--tRNA ligase
F4V73_RS14135 F4V73_RS14135 Morganella psychrotolerans trpS tryptophan--tRNA ligase
PMI_RS15000 PMI_RS15000 Proteus mirabilis HI4320 trpS tryptophan--tRNA ligase

Distribution of group_1600 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1600 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1600

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1600.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 trpS 7

Product

# Product Occurence
1 tryptophan--tRNA ligase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0180 7 J Translation, ribosomal structure and biogenesis (J) Tryptophanyl-tRNA synthetase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01867 7 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Aminoacyl-tRNA biosynthesis -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00579 7 tRNA synthetases class I (W and Y)

Annotations of the 163 SwissProt hits

Annotation Number of occurrences
Tryptophan--tRNA ligase 136
Tryptophan--tRNA ligase 1 3
Tryptophan--tRNA ligase 2 4
Tryptophan--tRNA ligase, chloroplastic/mitochondrial 1
Tryptophan--tRNA ligase, mitochondrial 7
Tyrosine--tRNA ligase 12

Protein length

Min length 342
Max length 343
Mean length (sd) 342.1 (0.4)
Median length 342.0

Protein length distribution