Homologs in group_1551

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10045 FBDBKF_10045 64.5 Morganella morganii S1 holA DNA polymerase III subunit delta
EHELCC_04845 EHELCC_04845 64.5 Morganella morganii S2 holA DNA polymerase III subunit delta
NLDBIP_04845 NLDBIP_04845 64.5 Morganella morganii S4 holA DNA polymerase III subunit delta
LHKJJB_13785 LHKJJB_13785 64.5 Morganella morganii S3 holA DNA polymerase III subunit delta
HKOGLL_12750 HKOGLL_12750 64.5 Morganella morganii S5 holA DNA polymerase III subunit delta
F4V73_RS00290 F4V73_RS00290 63.4 Morganella psychrotolerans holA DNA polymerase III subunit delta

Distribution of the homologs in the orthogroup group_1551

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1551

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P28630 3.82e-155 441 65 0 341 1 holA DNA polymerase III subunit delta Escherichia coli (strain K12)
P43747 8.57e-86 265 46 4 344 3 holA DNA polymerase III subunit delta Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57520 5.36e-55 186 27 2 333 3 holA DNA polymerase III subunit delta Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9B8 7.72e-40 146 26 1 318 3 holA DNA polymerase III subunit delta Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89AC0 5.42e-29 117 23 1 329 3 holA DNA polymerase III subunit delta Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O67189 9.15e-05 47 22 2 169 4 aq_1104 Uncharacterized protein aq_1104 Aquifex aeolicus (strain VF5)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02125
Feature type CDS
Gene holA
Product DNA polymerase III subunit delta
Location 497964 - 498998 (strand: -1)
Length 1035 (nucleotides) / 344 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1551
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06144 DNA polymerase III, delta subunit
PF14840 Processivity clamp loader gamma complex DNA pol III C-term

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1466 Replication, recombination and repair (L) L DNA polymerase III, delta subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02340 DNA polymerase III subunit delta [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Protein Sequence

MIRLYPEQLNAQLQEGLRQSYLLWGNEPLLLQESQDAIQTVAKSQGFTEHYQFTLDNSTDWNEIYSLCQSLSLFSQKQSILLHLPENGPNAAMSEKLLRLSHELHEDLLLILRGHKLTKAQENSEWFKTLSQQGIYVTCLTPELDKLPNWVARRAKQKGLELDEQGNQLLCYCYEGNLLALAQAIERLCLLYPDGKLTLPRVEAAVNDASHFTAYHWIDALLAGKTQRAWHILQQLKREDTEPVILLRTLQRELMQLITLHRSAKTASLKSVFDQHRIWQNRRPIFTAALQRLSEHQLLTAMRLLTQIEITLKQDHGQNVWPELHALGLLLCGKALPEGFIRHG

Flanking regions ( +/- flanking 50bp)

CAAAAAGCGTCAGAGGCAGCTAAAGCGAAACAGATAATCTCACCAGCCAAATGATCCGCCTTTATCCAGAACAACTTAATGCGCAACTCCAAGAGGGGTTGCGCCAAAGTTACCTACTTTGGGGTAATGAACCGCTATTACTCCAAGAATCTCAAGATGCCATTCAAACGGTGGCAAAATCACAAGGCTTTACGGAACATTATCAATTTACCCTTGATAACAGCACTGATTGGAATGAAATATATTCACTCTGTCAGTCACTGAGTCTTTTTTCACAAAAGCAATCTATCTTACTCCATCTTCCTGAAAATGGTCCTAATGCGGCAATGTCAGAAAAGCTTTTACGCTTATCTCACGAATTGCATGAAGATCTCTTGTTAATTTTACGTGGACATAAATTAACCAAGGCACAGGAAAATAGCGAATGGTTTAAAACACTCAGCCAGCAAGGTATTTATGTGACTTGCTTAACCCCTGAGTTAGATAAATTACCAAATTGGGTAGCGAGACGCGCCAAGCAAAAAGGCCTTGAGCTTGATGAACAAGGTAATCAATTACTGTGTTACTGCTATGAAGGAAATTTACTCGCTTTAGCTCAAGCAATTGAACGCCTCTGTTTGCTCTATCCTGATGGTAAATTAACCCTGCCAAGAGTTGAAGCGGCTGTCAATGATGCCTCTCATTTTACTGCTTATCATTGGATTGATGCATTATTAGCAGGCAAAACCCAACGGGCATGGCATATCTTGCAGCAACTAAAAAGAGAGGATACTGAACCCGTTATTCTGCTTAGAACATTGCAACGCGAATTAATGCAATTAATTACCTTACATCGTAGCGCTAAAACGGCCTCCTTAAAATCCGTTTTCGATCAACATCGGATATGGCAAAACCGACGTCCGATATTTACCGCCGCGTTACAACGTTTGTCAGAGCATCAATTACTCACTGCCATGCGATTACTTACCCAGATTGAAATAACCCTTAAACAGGATCACGGACAAAACGTTTGGCCTGAACTTCATGCCCTTGGCTTATTATTATGTGGAAAAGCATTACCGGAAGGATTTATTCGCCATGGCTAGCACCAATAATAACCCCCCTTTAATTCATCAAGCCATTGCTCTATATGGTG