Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF22692, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_468 | FBDBKF_00690 | 115858 | 116640 | -1 | flgG | flagellar basal-body rod protein FlgG | Morganella morganii S1 |
1 | group_469 | FBDBKF_00695 | 116660 | 117415 | -1 | flgF | Flagellar basal body rod protein FlgF | Morganella morganii S1 |
2 | group_470 | FBDBKF_00700 | 117437 | 118648 | -1 | flgE | flagellar hook protein FlgE | Morganella morganii S1 |
3 | group_470 | EHELCC_00845 | 190220 | 191431 | 1 | flgE | flagellar hook protein FlgE | Morganella morganii S2 |
4 | group_469 | EHELCC_00850 | 191453 | 192208 | 1 | flgF | Flagellar basal body rod protein FlgF | Morganella morganii S2 |
5 | group_468 | EHELCC_00855 | 192228 | 193010 | 1 | flgG | flagellar basal-body rod protein FlgG | Morganella morganii S2 |
6 | group_468 | NLDBIP_02605 | 487126 | 487908 | -1 | flgG | flagellar basal-body rod protein FlgG | Morganella morganii S4 |
7 | group_469 | NLDBIP_02610 | 487928 | 488683 | -1 | flgF | Flagellar basal body rod protein FlgF | Morganella morganii S4 |
8 | group_470 | NLDBIP_02615 | 488705 | 489916 | -1 | flgE | flagellar hook protein FlgE | Morganella morganii S4 |
9 | group_468 | LHKJJB_04120 | 94367 | 95149 | -1 | flgG | flagellar basal-body rod protein FlgG | Morganella morganii S3 |
10 | group_469 | LHKJJB_04125 | 95169 | 95924 | -1 | flgF | Flagellar basal body rod protein FlgF | Morganella morganii S3 |
11 | group_470 | LHKJJB_04130 | 95946 | 97157 | -1 | flgE | flagellar hook protein FlgE | Morganella morganii S3 |
12 | group_470 | HKOGLL_02915 | 190425 | 191636 | 1 | flgE | flagellar hook protein FlgE | Morganella morganii S5 |
13 | group_469 | HKOGLL_02920 | 191658 | 192413 | 1 | flgF | Flagellar basal body rod protein FlgF | Morganella morganii S5 |
14 | group_468 | HKOGLL_02925 | 192433 | 193215 | 1 | flgG | flagellar basal-body rod protein FlgG | Morganella morganii S5 |
15 | group_468 | F4V73_RS06700 | 1392686 | 1393468 | -1 | flgG | flagellar basal-body rod protein FlgG | Morganella psychrotolerans |
16 | group_469 | F4V73_RS06705 | 1393488 | 1394243 | -1 | flagellar basal body rod protein FlgF | Morganella psychrotolerans | |
17 | group_470 | F4V73_RS06710 | 1394259 | 1395473 | -1 | flgE | flagellar hook protein FlgE | Morganella psychrotolerans |
18 | group_468 | PMI_RS08050 | 1760295 | 1761077 | -1 | flgG | flagellar basal-body rod protein FlgG | Proteus mirabilis HI4320 |
19 | group_469 | PMI_RS08055 | 1761097 | 1761852 | -1 | flagellar basal body rod protein FlgF | Proteus mirabilis HI4320 | |
20 | group_470 | PMI_RS08060 | 1761874 | 1763094 | -1 | flgE | flagellar hook protein FlgE | Proteus mirabilis HI4320 |