Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF22692
Protein list: lists the 21 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.
| Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
|---|---|---|---|---|---|---|---|---|
| 0 | group_545 | FBDBKF_00690 | 115858 | 116640 | -1 | flgG | flagellar basal-body rod protein FlgG | Morganella morganii S1 |
| 1 | group_546 | FBDBKF_00695 | 116660 | 117415 | -1 | flgF | Flagellar basal body rod protein FlgF | Morganella morganii S1 |
| 2 | group_547 | FBDBKF_00700 | 117437 | 118648 | -1 | flgE | flagellar hook protein FlgE | Morganella morganii S1 |
| 3 | group_547 | EHELCC_00845 | 190220 | 191431 | 1 | flgE | flagellar hook protein FlgE | Morganella morganii S2 |
| 4 | group_546 | EHELCC_00850 | 191453 | 192208 | 1 | flgF | Flagellar basal body rod protein FlgF | Morganella morganii S2 |
| 5 | group_545 | EHELCC_00855 | 192228 | 193010 | 1 | flgG | flagellar basal-body rod protein FlgG | Morganella morganii S2 |
| 6 | group_545 | NLDBIP_02605 | 487126 | 487908 | -1 | flgG | flagellar basal-body rod protein FlgG | Morganella morganii S4 |
| 7 | group_546 | NLDBIP_02610 | 487928 | 488683 | -1 | flgF | Flagellar basal body rod protein FlgF | Morganella morganii S4 |
| 8 | group_547 | NLDBIP_02615 | 488705 | 489916 | -1 | flgE | flagellar hook protein FlgE | Morganella morganii S4 |
| 9 | group_545 | LHKJJB_04120 | 94367 | 95149 | -1 | flgG | flagellar basal-body rod protein FlgG | Morganella morganii S3 |
| 10 | group_546 | LHKJJB_04125 | 95169 | 95924 | -1 | flgF | Flagellar basal body rod protein FlgF | Morganella morganii S3 |
| 11 | group_547 | LHKJJB_04130 | 95946 | 97157 | -1 | flgE | flagellar hook protein FlgE | Morganella morganii S3 |
| 12 | group_547 | HKOGLL_02915 | 190425 | 191636 | 1 | flgE | flagellar hook protein FlgE | Morganella morganii S5 |
| 13 | group_546 | HKOGLL_02920 | 191658 | 192413 | 1 | flgF | Flagellar basal body rod protein FlgF | Morganella morganii S5 |
| 14 | group_545 | HKOGLL_02925 | 192433 | 193215 | 1 | flgG | flagellar basal-body rod protein FlgG | Morganella morganii S5 |
| 15 | group_545 | F4V73_RS06700 | 1392686 | 1393468 | -1 | flgG | flagellar basal-body rod protein FlgG | Morganella psychrotolerans |
| 16 | group_546 | F4V73_RS06705 | 1393488 | 1394243 | -1 | flagellar basal body rod protein FlgF | Morganella psychrotolerans | |
| 17 | group_547 | F4V73_RS06710 | 1394259 | 1395473 | -1 | flgE | flagellar hook protein FlgE | Morganella psychrotolerans |
| 18 | group_545 | PMI_RS08050 | 1760295 | 1761077 | -1 | flgG | flagellar basal-body rod protein FlgG | Proteus mirabilis HI4320 |
| 19 | group_546 | PMI_RS08055 | 1761097 | 1761852 | -1 | flagellar basal body rod protein FlgF | Proteus mirabilis HI4320 | |
| 20 | group_547 | PMI_RS08060 | 1761874 | 1763094 | -1 | flgE | flagellar hook protein FlgE | Proteus mirabilis HI4320 |
