PF21943


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21943, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21943
Description Tetracyclin repressor-like, C-terminal domain

Occurence in the database

PF21943 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1741 FBDBKF_12140 83185 83841 -1 fabR HTH-type transcriptional repressor FabR Morganella morganii S1
1 group_1741 EHELCC_14165 50864 51520 1 fabR HTH-type transcriptional repressor FabR Morganella morganii S2
2 group_1741 NLDBIP_15260 54801 55457 1 fabR HTH-type transcriptional repressor FabR Morganella morganii S4
3 group_1741 LHKJJB_15350 83185 83841 -1 fabR HTH-type transcriptional repressor FabR Morganella morganii S3
4 group_1741 HKOGLL_14470 69848 70504 -1 fabR HTH-type transcriptional repressor FabR Morganella morganii S5
5 group_1741 F4V73_RS16935 8442 9098 -1 fabR HTH-type transcriptional repressor FabR Morganella psychrotolerans
6 group_1741 PMI_RS16035 3564239 3564919 1 fabR HTH-type transcriptional repressor FabR Proteus mirabilis HI4320