PF18389


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF18389, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF18389
Description TrmO C-terminal domain

Occurence in the database

PF18389 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1044 FBDBKF_05905 4166 4873 1 tsaA tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO Morganella morganii S1
1 group_1044 EHELCC_08950 4738 5445 1 tsaA tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO Morganella morganii S2
2 group_1044 NLDBIP_09330 4738 5445 1 tsaA tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO Morganella morganii S4
3 group_1044 LHKJJB_08425 211793 212500 -1 tsaA tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO Morganella morganii S3
4 group_1044 HKOGLL_07975 211793 212500 -1 tsaA tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO Morganella morganii S5
5 group_1044 F4V73_RS15990 208593 209300 -1 tsaA tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO Morganella psychrotolerans
6 group_1044 PMI_RS11175 2458340 2459047 1 tsaA tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO Proteus mirabilis HI4320