Homologs in group_1111

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_08950 EHELCC_08950 100.0 Morganella morganii S2 tsaA tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
NLDBIP_09330 NLDBIP_09330 100.0 Morganella morganii S4 tsaA tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
LHKJJB_08425 LHKJJB_08425 100.0 Morganella morganii S3 tsaA tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
HKOGLL_07975 HKOGLL_07975 100.0 Morganella morganii S5 tsaA tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
F4V73_RS15990 F4V73_RS15990 87.7 Morganella psychrotolerans tsaA tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
PMI_RS11175 PMI_RS11175 60.0 Proteus mirabilis HI4320 tsaA tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO

Distribution of the homologs in the orthogroup group_1111

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1111

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P28634 2.63e-105 306 61 0 235 1 trmO tRNA (adenine(37)-N6)-methyltransferase Escherichia coli (strain K12)
P44740 7.67e-87 260 50 3 238 1 trmO tRNA (adenine(37)-N6)-methyltransferase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9RPT0 8.51e-58 186 48 5 219 1 rcsF Putative S-adenosylmethionine-dependent methyltransferase RcsF Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O68638 1.41e-48 162 53 2 162 3 rcsF Putative S-adenosylmethionine-dependent methyltransferase RcsF Pseudomonas aeruginosa
P37752 1.98e-45 152 48 4 176 3 trmO tRNA (adenine(37)-N6)-methyltransferase (Fragment) Eikenella corrodens
Q4V7E0 6.25e-29 115 45 4 134 2 Trmo tRNA (adenine(37)-N6)-methyltransferase Rattus norvegicus
Q9BU70 9.92e-28 112 47 4 134 1 TRMO tRNA (adenine(37)-N6)-methyltransferase Homo sapiens
Q562D6 1.34e-27 112 44 4 134 2 Trmo tRNA (adenine(37)-N6)-methyltransferase Mus musculus
O27825 1.82e-19 84 37 4 143 3 MTH_1797 Probable S-adenosyl-L-methionine-binding protein MTH_1797 Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q9V0X6 9.77e-19 84 36 5 136 3 PYRAB06630 Probable S-adenosyl-L-methionine-binding protein PYRAB06630 Pyrococcus abyssi (strain GE5 / Orsay)
O29998 5.38e-16 75 35 5 140 1 AF_0241 S-adenosyl-L-methionine-binding protein AF_0241 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
O29816 8.53e-15 75 34 5 172 3 AF_0433 Probable S-adenosyl-L-methionine-binding protein AF_0433 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
O52278 6.48e-12 65 33 4 129 3 virR Probable S-adenosyl-L-methionine-binding protein VirR Rhizobium radiobacter
Q6NDF6 1.11e-08 56 30 7 156 1 RPA0152 S-adenosyl-L-methionine-binding protein RPA0152 Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Q58978 5.19e-07 50 33 2 89 3 MJ1583 Probable S-adenosyl-L-methionine-binding protein MJ1583 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9HQK7 1.28e-05 46 42 1 57 3 VNG_1115H Probable S-adenosyl-L-methionine-binding protein VNG_1115H Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
O58783 0.00087 42 32 3 93 3 PH1056 Probable S-adenosyl-L-methionine-binding protein PH1056 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_05905
Feature type CDS
Gene tsaA
Product tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
Location 4166 - 4873 (strand: 1)
Length 708 (nucleotides) / 235 (amino acids)
In genomic island -

Contig

Accession contig_6
Length 178871 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1111
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01980 tRNA-methyltransferase O
PF18389 TrmO C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1720 Translation, ribosomal structure and biogenesis (J) J tRNA (Thr-GGU) A37 N6-methylase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K22900 tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] - -

Protein Sequence

MSEFSFSPVGFIRSPWQEKFAIPRQPGLVEDGTGELHFVAPYNHADCVRGLEQFSHVWVIFVFHDIPAGSWRPLVRPPRLGGNAKMGVFATRSTFRPNPIGMSLVELKKVCYDGDTAYLSLGSLDLLNGTPVLDIKPYLPYAESVPGALAGFAQEEPPADMPVVFSPAAQQFITAQAAQYPDLARFITQVLAQDPRPAYKKQQADDKIYAVHLLDLNVRWHIRDGVTEVISLEKR

Flanking regions ( +/- flanking 50bp)

GGGTTGTAAGCAGCTGGCGGTATGCGAAGGTACTGCGATTAAGGTTGATGATGTCTGAGTTTTCATTTTCGCCCGTGGGGTTTATCCGCTCACCGTGGCAGGAAAAATTTGCGATTCCGCGCCAGCCGGGGCTGGTTGAGGATGGTACCGGGGAACTGCACTTTGTGGCGCCCTATAATCACGCCGACTGCGTGCGCGGACTGGAACAGTTCAGTCATGTGTGGGTCATCTTTGTTTTCCATGATATTCCGGCCGGCAGCTGGCGTCCGCTGGTACGCCCGCCGCGCCTTGGCGGTAATGCAAAAATGGGCGTGTTTGCCACCCGCTCCACCTTCCGCCCGAATCCGATCGGGATGTCGCTGGTTGAACTGAAAAAAGTCTGTTACGACGGCGACACGGCGTATCTCTCCCTCGGCAGCCTGGATCTGCTTAACGGCACACCGGTGCTGGATATCAAACCCTATCTGCCCTATGCTGAATCCGTGCCCGGCGCACTGGCCGGTTTTGCGCAGGAAGAGCCGCCGGCGGATATGCCGGTCGTGTTCAGCCCTGCCGCGCAGCAATTCATAACAGCTCAGGCCGCACAATATCCTGATTTGGCGCGTTTTATCACACAGGTACTGGCGCAGGATCCGCGTCCGGCGTATAAAAAACAACAGGCTGACGATAAAATTTATGCCGTGCACCTGCTGGATTTAAATGTCCGCTGGCATATCCGTGACGGCGTGACCGAAGTCATCAGTCTGGAAAAACGCTAAACCCCTTTTGGGGCGCGGCAGTCACTGGTAAACTGTCAGGCTTAACTTCA