Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF18073, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 14 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF18073 |
---|---|
Description | Rubredoxin metal binding domain |
Occurence in the database
PF18073 is associated with 14 different proteins (see tab "Protein list" and "Profile") |
The 14 proteins are classified into 2 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_935 | FBDBKF_05080 | 21246 | 22415 | -1 | lapB | lipopolysaccharide assembly protein LapB | Morganella morganii S1 |
1 | group_1152 | FBDBKF_06600 | 161249 | 162637 | -1 | radA | DNA repair protein RadA | Morganella morganii S1 |
2 | group_1152 | EHELCC_09645 | 161821 | 163209 | -1 | radA | DNA repair protein RadA | Morganella morganii S2 |
3 | group_935 | EHELCC_12510 | 159079 | 160248 | 1 | lapB | lipopolysaccharide assembly protein LapB | Morganella morganii S2 |
4 | group_1152 | NLDBIP_10025 | 161821 | 163209 | -1 | radA | DNA repair protein RadA | Morganella morganii S4 |
5 | group_935 | NLDBIP_12850 | 159034 | 160203 | 1 | lapB | lipopolysaccharide assembly protein LapB | Morganella morganii S4 |
6 | group_1152 | LHKJJB_07730 | 54029 | 55417 | 1 | radA | DNA repair protein RadA | Morganella morganii S3 |
7 | group_935 | LHKJJB_12710 | 159079 | 160248 | 1 | lapB | lipopolysaccharide assembly protein LapB | Morganella morganii S3 |
8 | group_1152 | HKOGLL_07280 | 54029 | 55417 | 1 | radA | DNA repair protein RadA | Morganella morganii S5 |
9 | group_935 | HKOGLL_11325 | 159079 | 160248 | 1 | lapB | lipopolysaccharide assembly protein LapB | Morganella morganii S5 |
10 | group_935 | F4V73_RS05535 | 1176313 | 1177482 | -1 | lapB | lipopolysaccharide assembly protein LapB | Morganella psychrotolerans |
11 | group_1152 | F4V73_RS15345 | 52540 | 53931 | 1 | radA | DNA repair protein RadA | Morganella psychrotolerans |
12 | group_935 | PMI_RS06340 | 1389177 | 1390346 | -1 | lapB | lipopolysaccharide assembly protein LapB | Proteus mirabilis HI4320 |
13 | group_1152 | PMI_RS12385 | 2745908 | 2747299 | -1 | radA | DNA repair protein RadA | Proteus mirabilis HI4320 |