PF18073


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF18073, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF18073
Description Rubredoxin metal binding domain

Occurence in the database

PF18073 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_935 FBDBKF_05080 21246 22415 -1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S1
1 group_1152 FBDBKF_06600 161249 162637 -1 radA DNA repair protein RadA Morganella morganii S1
2 group_1152 EHELCC_09645 161821 163209 -1 radA DNA repair protein RadA Morganella morganii S2
3 group_935 EHELCC_12510 159079 160248 1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S2
4 group_1152 NLDBIP_10025 161821 163209 -1 radA DNA repair protein RadA Morganella morganii S4
5 group_935 NLDBIP_12850 159034 160203 1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S4
6 group_1152 LHKJJB_07730 54029 55417 1 radA DNA repair protein RadA Morganella morganii S3
7 group_935 LHKJJB_12710 159079 160248 1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S3
8 group_1152 HKOGLL_07280 54029 55417 1 radA DNA repair protein RadA Morganella morganii S5
9 group_935 HKOGLL_11325 159079 160248 1 lapB lipopolysaccharide assembly protein LapB Morganella morganii S5
10 group_935 F4V73_RS05535 1176313 1177482 -1 lapB lipopolysaccharide assembly protein LapB Morganella psychrotolerans
11 group_1152 F4V73_RS15345 52540 53931 1 radA DNA repair protein RadA Morganella psychrotolerans
12 group_935 PMI_RS06340 1389177 1390346 -1 lapB lipopolysaccharide assembly protein LapB Proteus mirabilis HI4320
13 group_1152 PMI_RS12385 2745908 2747299 -1 radA DNA repair protein RadA Proteus mirabilis HI4320