Homologs in group_1152

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06600 FBDBKF_06600 91.3 Morganella morganii S1 radA DNA repair protein RadA
EHELCC_09645 EHELCC_09645 91.3 Morganella morganii S2 radA DNA repair protein RadA
NLDBIP_10025 NLDBIP_10025 91.3 Morganella morganii S4 radA DNA repair protein RadA
LHKJJB_07730 LHKJJB_07730 91.3 Morganella morganii S3 radA DNA repair protein RadA
HKOGLL_07280 HKOGLL_07280 91.3 Morganella morganii S5 radA DNA repair protein RadA
F4V73_RS15345 F4V73_RS15345 89.8 Morganella psychrotolerans radA DNA repair protein RadA

Distribution of the homologs in the orthogroup group_1152

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1152

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24517 0.0 855 89 2 461 3 radA DNA repair protein RadA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P24554 0.0 853 88 2 461 1 radA DNA repair protein RadA Escherichia coli (strain K12)
P45266 0.0 761 79 1 460 3 radA DNA repair protein RadA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P96963 0.0 587 61 2 457 3 radA DNA repair protein RadA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P37572 2.34e-143 421 46 6 457 1 radA DNA repair protein RadA Bacillus subtilis (strain 168)
Q9KGG1 8.99e-143 419 45 5 462 3 radA DNA repair protein RadA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q48761 7.6e-132 391 43 5 457 3 radA DNA repair protein RadA Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q92F42 3.92e-131 389 43 5 457 3 radA DNA repair protein RadA Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
P74391 9.28e-126 377 44 5 459 3 radA DNA repair protein RadA Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O66827 6.38e-123 368 42 4 452 3 radA DNA repair protein RadA Aquifex aeolicus (strain VF5)
Q8P2Q5 2.01e-122 367 44 4 430 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M18 (strain MGAS8232)
Q5XDZ7 2.01e-122 367 44 4 430 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
Q9A1K1 2.03e-122 367 44 4 430 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M1
P0DD79 8.86e-122 365 44 4 430 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M3 (strain SSI-1)
P0DD78 8.86e-122 365 44 4 430 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
Q1RJR7 1.84e-121 364 45 6 428 3 radA DNA repair protein RadA Rickettsia bellii (strain RML369-C)
O84300 3.13e-120 362 41 4 462 3 radA DNA repair protein RadA Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q2YMH5 1.44e-119 360 44 5 433 3 radA DNA repair protein RadA Brucella abortus (strain 2308)
Q4UL56 3.59e-118 356 44 6 428 3 radA DNA repair protein RadA Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q92HG1 5.14e-118 355 44 6 428 3 radA DNA repair protein RadA Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q9Z9C8 1.56e-117 355 42 4 461 3 radA DNA repair protein RadA Chlamydia pneumoniae
Q8DRP0 1.75e-116 351 45 1 391 1 radA DNA repair protein RadA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Q9PN90 4.72e-115 348 41 6 455 3 radA DNA repair protein RadA Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Q68WI9 1.31e-113 344 42 5 428 3 radA DNA repair protein RadA Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q9ZD04 1.55e-112 342 42 5 428 3 radA DNA repair protein RadA Rickettsia prowazekii (strain Madrid E)
Q9PK96 1.65e-112 342 40 4 457 3 radA DNA repair protein RadA Chlamydia muridarum (strain MoPn / Nigg)
Q9ZMK9 1.45e-111 339 40 3 423 3 radA DNA repair protein RadA Helicobacter pylori (strain J99 / ATCC 700824)
P56148 3.8e-111 338 41 4 426 3 radA DNA repair protein RadA Helicobacter pylori (strain ATCC 700392 / 26695)
Q9RVC4 1.41e-104 323 44 4 426 3 radA DNA repair protein RadA Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
P9WHJ9 4.17e-97 303 39 4 427 1 radA DNA repair protein RadA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WHJ8 4.17e-97 303 39 4 427 3 radA DNA repair protein RadA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P65954 4.17e-97 303 39 4 427 3 radA DNA repair protein RadA Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
O83985 1.32e-94 296 38 9 467 3 radA DNA repair protein RadA Treponema pallidum (strain Nichols)
A0R563 5.22e-94 295 36 8 459 1 radA DNA repair protein RadA Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
O28184 1.11e-06 53 26 9 200 3 radB DNA repair and recombination protein RadB Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
A3CXI2 1.9e-06 52 26 9 225 3 radB DNA repair and recombination protein RadB Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Q58812 2.17e-06 53 27 2 114 1 MJ1417 Archaeal Lon protease Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P42425 4.95e-06 52 28 1 107 1 lon2 Lon protease 2 Bacillus subtilis (strain 168)
P95547 6.86e-06 50 25 7 220 1 radB DNA repair and recombination protein RadB Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
O29883 1.07e-05 51 25 3 154 1 AF_0364 Archaeal Lon protease Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q9XW87 2.08e-05 50 32 1 88 3 lonp-2 Lon protease homolog 2, peroxisomal Caenorhabditis elegans
P81415 4.72e-05 48 22 6 230 1 radB DNA repair and recombination protein RadB Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
A0LG61 5.14e-05 49 28 2 114 3 lon2 Lon protease 2 Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Q8NKS6 5.87e-05 49 23 2 120 1 lon Archaeal Lon protease Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
A8F811 8.1e-05 48 30 2 95 3 lon Lon protease Pseudothermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / NBRC 107922 / TMO)
P93647 0.000155 48 29 2 109 2 LON1 Lon protease homolog 2, peroxisomal Zea mays
P73860 0.000166 47 28 8 160 1 kaiC2 Circadian clock protein KaiC2 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P0CQ17 0.000193 47 31 1 98 3 PIM1 Lon protease homolog, mitochondrial Cryptococcus neoformans var. neoformans serotype D (strain B-3501A)
P0CQ16 0.000196 47 31 1 98 3 PIM1 Lon protease homolog, mitochondrial Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
P46067 0.000274 47 25 2 108 2 lon Lon protease Erwinia amylovora
B3E7K2 0.000318 47 27 2 111 3 lon Lon protease Trichlorobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)
A9B3R2 0.000427 46 30 1 86 3 lon2 Lon protease 2 Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785 / 114-95)
B5Y8Q8 0.000466 46 23 2 134 3 lon Lon protease Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / OCM 4 / BT)
Q6MTF4 0.000483 46 25 2 113 3 lon Lon protease Mycoplasma mycoides subsp. mycoides SC (strain CCUG 32753 / NCTC 10114 / PG1)
B8BDV1 0.000513 46 32 1 83 2 LON1 Lon protease homolog 2, peroxisomal Oryza sativa subsp. indica
Q0J032 0.000522 46 32 1 83 2 Os09g0533400 Lon protease homolog 2, peroxisomal Oryza sativa subsp. japonica
A6LD45 0.000531 46 29 2 127 3 lon Lon protease Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)
P57549 0.000595 46 26 2 108 3 lon Lon protease Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q9HSC3 0.000743 45 27 1 93 3 VNG_0303G Archaeal Lon protease Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
B2V6N0 0.001 45 33 1 78 3 lon Lon protease Sulfurihydrogenibium sp. (strain YO3AOP1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12385
Feature type CDS
Gene radA
Product DNA repair protein RadA
Location 2745908 - 2747299 (strand: -1)
Length 1392 (nucleotides) / 463 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1152
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13481 AAA domain
PF13541 Subunit ChlI of Mg-chelatase
PF18073 Rubredoxin metal binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1066 Replication, recombination and repair (L) L DNA repair protein RadA/Sms, contains AAA+ ATPase domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04485 DNA repair protein RadA/Sms - -

Protein Sequence

MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAATPSARNDRFSGFAGDAKGISRVQKLSEISLEALPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTMCRLAAEMKTLYVTGEESLQQVAMRAHRLGLPTTELNMLSETSIEQICLIAAQEQPKLMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTNDIAIIMVGHVTKDGTLAGPKVLEHCIDCSVMLDGETDSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMLSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRNRPLPRDLVIFGEVGLAGEIRPVPSGQERIAEAAKHGFKRAIVPNANMPKKNPPDMKVYGVKKLSDALSVLDDLDDF

Flanking regions ( +/- flanking 50bp)

AGCACGAAGAACGATAAGTTTTCAGTCAAGAAAATAACGGGGAGAGCAGTGTGGCAAAAGCAGCCAAAAGAGCCTTTGTATGTAATGAATGTGGTGCCGATTACCCGCGTTGGCAAGGACAATGTTCTGCGTGTCATGCGTGGAATACCATTACGGAAGTGCGCCTTGCGGCGACACCTTCTGCCCGTAACGATCGTTTTAGCGGTTTTGCCGGAGATGCGAAAGGAATAAGCCGTGTTCAAAAGCTCTCTGAAATTAGCCTTGAAGCATTACCTCGCTTTTCTACTGGATTTAAAGAATTTGATCGTGTGTTAGGCGGAGGGGTTGTGCCGGGAAGTGCCATTTTAATTGGCGGAAATCCGGGGGCAGGTAAAAGTACACTATTACTGCAGACCATGTGTCGTTTAGCCGCTGAAATGAAAACCTTGTATGTCACGGGAGAAGAGTCATTACAGCAGGTTGCCATGCGGGCGCACCGCTTAGGCTTACCGACAACCGAATTGAATATGTTGTCAGAAACCAGTATTGAACAAATTTGTTTAATTGCTGCTCAAGAGCAACCTAAATTAATGGTCATTGACTCGATCCAAGTAATGCATATGGCCGATATTCAATCTTCCCCGGGCAGTGTGGCACAGGTACGAGAGACAGCTGCTTATCTGACTCGTTTTGCTAAAACGAATGATATTGCCATTATTATGGTGGGTCATGTCACCAAAGATGGCACATTAGCGGGACCTAAAGTATTAGAACACTGTATTGACTGCTCAGTGATGCTTGATGGTGAAACGGACTCACGTTTTAGAACATTGCGTAGTCATAAAAACCGCTTTGGTGCGGTGAATGAGTTAGGTGTTTTTGCCATGACGGAACAAGGTTTACGCGAAGTGAGTAATCCATCGGCTATCTTTTTAAGTCGTGGTGATGAGGTGACTTCAGGCAGTTCTGTTATGGTGGTTTGGGAAGGAACGCGGCCATTACTGGTGGAGATCCAAGCATTGGTCGACCACTCTATGTTATCAAATCCTCGCCGTGTTGCGGTGGGATTAGAGCAAAATCGCTTAGCAATATTATTAGCGGTTTTGCATCGTCATGGTGGTTTACAGATGTCTGATCAAGATGTCTTTGTTAATGTCGTTGGCGGTGTCAAAGTAACCGAAACTAGTGCAGATTTAGCTTTATTACTATCATTAGTATCGAGTTTTCGTAATCGTCCTTTACCGCGTGATTTAGTTATTTTTGGTGAGGTAGGACTCGCGGGAGAAATTCGTCCTGTACCAAGTGGACAAGAGCGAATTGCAGAAGCAGCAAAACACGGTTTTAAACGTGCTATTGTGCCTAATGCGAATATGCCAAAGAAAAATCCACCTGATATGAAAGTGTATGGAGTGAAGAAACTATCAGATGCGTTATCTGTACTTGATGATTTGGACGACTTCTAAAGGAGTAAATCATGGGATCTTTTGATTATATCAAACAGGCAATAAAAAAG