PF17827


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF17827, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF17827
Description PrmC N-terminal domain

Occurence in the database

PF17827 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_612 FBDBKF_01930 73539 74375 1 prmC peptide chain release factor N(5)-glutamine methyltransferase Morganella morganii S1
1 group_612 EHELCC_02400 461359 462195 1 prmC peptide chain release factor N(5)-glutamine methyltransferase Morganella morganii S2
2 group_612 NLDBIP_01060 217941 218777 -1 prmC peptide chain release factor N(5)-glutamine methyltransferase Morganella morganii S4
3 group_612 LHKJJB_00975 173908 174744 1 prmC peptide chain release factor N(5)-glutamine methyltransferase Morganella morganii S3
4 group_612 HKOGLL_01015 179419 180255 1 prmC peptide chain release factor N(5)-glutamine methyltransferase Morganella morganii S5
5 group_612 F4V73_RS04275 903780 904616 1 prmC peptide chain release factor N(5)-glutamine methyltransferase Morganella psychrotolerans
6 group_612 PMI_RS05270 1151628 1152476 1 prmC peptide chain release factor N(5)-glutamine methyltransferase Proteus mirabilis HI4320