PF17154


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF17154, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF17154
Description Gammaproteobacterial periplasmic sensor domain

Occurence in the database

PF17154 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1716 FBDBKF_11965 41570 42277 -1 hmsP Biofilm formation regulator HmsP Morganella morganii S1
1 group_1716 EHELCC_14340 92428 93135 1 hmsP Biofilm formation regulator HmsP Morganella morganii S2
2 group_1716 NLDBIP_15435 96365 97072 1 hmsP Biofilm formation regulator HmsP Morganella morganii S4
3 group_1716 LHKJJB_15175 41570 42277 -1 hmsP Biofilm formation regulator HmsP Morganella morganii S3
4 group_1716 HKOGLL_14295 28233 28940 -1 hmsP Biofilm formation regulator HmsP Morganella morganii S5
5 group_1716 F4V73_RS14690 174103 174810 1 HAMP domain-containing protein Morganella psychrotolerans
6 group_1716 PMI_RS14035 3115668 3116378 -1 HAMP domain-containing protein Proteus mirabilis HI4320