Orthogroup:group_1756


Homologs in group_1756

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_12230 FBDBKF_12230 Morganella morganii S1 priA primosomal protein N'
EHELCC_14075 EHELCC_14075 Morganella morganii S2 priA primosomal protein N'
NLDBIP_15170 NLDBIP_15170 Morganella morganii S4 priA primosomal protein N'
LHKJJB_15440 LHKJJB_15440 Morganella morganii S3 priA primosomal protein N'
HKOGLL_14560 HKOGLL_14560 Morganella morganii S5 priA primosomal protein N'
F4V73_RS17060 F4V73_RS17060 Morganella psychrotolerans priA primosomal protein N'
PMI_RS15920 PMI_RS15920 Proteus mirabilis HI4320 priA primosomal protein N'

Distribution of group_1756 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1756 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1756

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1756.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 priA 7

Product

# Product Occurence
1 primosomal protein N' 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1198 7 L Replication, recombination and repair (L) Primosomal protein N' (replication factor Y) - superfamily II helicase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K04066 7 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] Homologous recombination -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00270 7 DEAD/DEAH box helicase
PF00271 7 Helicase conserved C-terminal domain
PF17764 7 3'DNA-binding domain (3'BD)
PF18074 7 Primosomal protein N C-terminal domain
PF18319 6 PriA DNA helicase Cys-rich region (CRR) domain
PF21213 7 Primosomal protein N'-like, winged helix

Annotations of the 62 SwissProt hits

Annotation Number of occurrences
ATP-dependent DNA helicase At3g02060, chloroplastic 1
ATP-dependent DNA helicase RecG 7
ComF operon protein 1 1
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 2
Primosomal protein N' 20
Probable primosomal protein N' 4
Transcription-repair-coupling factor 27

Protein length

Unique protein length 733

Protein length distribution