PF16989


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF16989, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF16989
Description Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ

Occurence in the database

PF16989 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_553 FBDBKF_01350 262484 263941 1 tssA type VI secretion system protein TssA Morganella morganii S1
1 group_553 EHELCC_00195 44927 46384 -1 tssA type VI secretion system protein TssA Morganella morganii S2
2 group_553 NLDBIP_03265 633752 635209 1 tssA type VI secretion system protein TssA Morganella morganii S4
3 group_553 LHKJJB_04780 240993 242450 1 tssA type VI secretion system protein TssA Morganella morganii S3
4 group_553 HKOGLL_02265 45132 46589 -1 tssA type VI secretion system protein TssA Morganella morganii S5
5 group_553 F4V73_RS02320 492131 493591 -1 tssA type VI secretion system protein TssA Morganella psychrotolerans
6 group_148 F4V73_RS16750 172757 174364 -1 tssA type VI secretion system protein TssA Morganella psychrotolerans
7 group_553 PMI_RS03625 815026 816489 -1 tssA type VI secretion system protein TssA Proteus mirabilis HI4320