PF16925


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF16925, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 19 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF16925
Description Tetracyclin repressor-like, C-terminal domain

Occurence in the database

PF16925 is associated with 19 different proteins (see tab "Protein list" and "Profile")
The 19 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2552 FBDBKF_02550 208214 208810 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
1 group_85 FBDBKF_04895 187142 187900 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
2 group_85 FBDBKF_10875 4385 5017 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
3 group_2552 EHELCC_03020 596034 596630 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
4 group_85 EHELCC_05350 54451 55083 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
5 group_85 EHELCC_06185 246599 247357 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
6 group_2552 NLDBIP_00440 83506 84102 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
7 group_85 NLDBIP_05670 95516 96148 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
8 group_85 NLDBIP_06505 287664 288422 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
9 group_2552 LHKJJB_01595 308583 309179 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
10 group_85 LHKJJB_02550 73040 73672 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
11 group_85 LHKJJB_03385 265188 265946 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
12 group_2552 HKOGLL_01635 314094 314690 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
13 group_85 HKOGLL_06860 187052 187810 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
14 group_85 HKOGLL_15930 96480 97112 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
15 group_2552 F4V73_RS04975 1060169 1060768 -1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
16 group_1663 F4V73_RS08130 1687673 1688281 1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
17 group_85 F4V73_RS11535 455887 456531 1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
18 group_85 PMI_RS01470 360449 361141 -1 TetR/AcrR family transcriptional regulator Proteus mirabilis HI4320