PF13998


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13998, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13998
Description MgrB protein

Occurence in the database

PF13998 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2180 FBDBKF_16415 7551 7685 1 mgrB PhoP regulon feedback inhibition membrane protein MgrB Morganella morganii S1
1 group_2180 EHELCC_08280 124537 124671 1 mgrB PhoP regulon feedback inhibition membrane protein MgrB Morganella morganii S2
2 group_2180 NLDBIP_08605 124537 124671 1 mgrB PhoP regulon feedback inhibition membrane protein MgrB Morganella morganii S4
3 group_2180 LHKJJB_05660 132488 132622 -1 mgrB PhoP regulon feedback inhibition membrane protein MgrB Morganella morganii S3
4 group_2180 HKOGLL_05255 109128 109262 1 mgrB PhoP regulon feedback inhibition membrane protein MgrB Morganella morganii S5
5 group_2180 F4V73_RS02935 622797 622943 1 mgrB PhoP/PhoQ regulator MgrB Morganella psychrotolerans
6 group_2180 PMI_RS19640 1706480 1706656 -1 mgrB PhoP/PhoQ regulator MgrB Proteus mirabilis HI4320