PF13860


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13860, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13860
Description FlgD Ig-like domain

Occurence in the database

PF13860 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_471 FBDBKF_00705 118678 119484 -1 flgD Flagellar hook-capping protein FlgD Morganella morganii S1
1 group_471 EHELCC_00840 189384 190190 1 flgD Flagellar hook-capping protein FlgD Morganella morganii S2
2 group_471 NLDBIP_02620 489946 490752 -1 flgD Flagellar hook-capping protein FlgD Morganella morganii S4
3 group_471 LHKJJB_04135 97187 97993 -1 flgD Flagellar hook-capping protein FlgD Morganella morganii S3
4 group_471 HKOGLL_02910 189589 190395 1 flgD Flagellar hook-capping protein FlgD Morganella morganii S5
5 group_471 F4V73_RS06715 1395503 1396333 -1 flagellar hook capping FlgD N-terminal domain-containing protein Morganella psychrotolerans
6 group_471 PMI_RS08065 1763123 1763917 -1 flagellar hook assembly protein FlgD Proteus mirabilis HI4320