Homologs in group_471

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00705 FBDBKF_00705 42.4 Morganella morganii S1 flgD Flagellar hook-capping protein FlgD
EHELCC_00840 EHELCC_00840 42.4 Morganella morganii S2 flgD Flagellar hook-capping protein FlgD
NLDBIP_02620 NLDBIP_02620 42.4 Morganella morganii S4 flgD Flagellar hook-capping protein FlgD
LHKJJB_04135 LHKJJB_04135 42.4 Morganella morganii S3 flgD Flagellar hook-capping protein FlgD
HKOGLL_02910 HKOGLL_02910 42.4 Morganella morganii S5 flgD Flagellar hook-capping protein FlgD
F4V73_RS06715 F4V73_RS06715 40.2 Morganella psychrotolerans - flagellar hook capping FlgD N-terminal domain-containing protein

Distribution of the homologs in the orthogroup group_471

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_471

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A1I9 2.96e-50 167 38 4 264 1 flgD Basal-body rod modification protein FlgD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1J0 2.96e-50 167 38 4 264 3 flgD Basal-body rod modification protein FlgD Salmonella typhi
P75936 5.81e-46 156 39 3 233 3 flgD Basal-body rod modification protein FlgD Escherichia coli (strain K12)
Q8K9K7 3.53e-31 118 33 4 234 3 flgD Basal-body rod modification protein FlgD Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57421 1.25e-28 112 31 3 233 3 flgD Basal-body rod modification protein FlgD Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P23455 2.29e-06 49 46 0 50 3 ylxG FlaA locus uncharacterized protein YlxG Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08065
Feature type CDS
Gene -
Product flagellar hook assembly protein FlgD
Location 1763123 - 1763917 (strand: -1)
Length 795 (nucleotides) / 264 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_471
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03963 Flagellar hook capping protein - N-terminal region
PF13860 FlgD Ig-like domain
PF13861 FlgD Tudor-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1843 Cell motility (N) N Flagellar hook-capping protein FlgD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02389 flagellar basal-body rod modification protein FlgD Flagellar assembly -

Protein Sequence

MGISASMNEPTDNTIIGEAPSSYHTKKGGSDDIKGNFLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGIETLNKTVNTIVGQIDQSQALRATSLVNHMVMIAGNEISVDKINNGENAGSDTDIDTDTTPDTQLDKLPASTDATDNENIFSSAFGFESFSPIDTLTVNITDSSGAKVRTIEMNSKILPDVYHFFWDCTDDDGNKVPTGKYQFTVNATFNDAQVPVKTLKSAVVNSVSMKEGKPHLDVGLGVIVSLDEIRKVF

Flanking regions ( +/- flanking 50bp)

AATCGCTGATGCAAAAAACGCTAATGATAGGTCAATAGGGAGAATAAATTGTGGGTATTTCTGCCTCAATGAATGAACCTACTGATAATACCATTATCGGGGAAGCGCCTTCATCCTACCACACTAAAAAAGGGGGGAGTGATGATATTAAAGGTAATTTCCTGACGTTGCTTATCACGCAGATGCAAAACCAAGATCCCACCAATCCAATGCAGAATAATGAGTTAACGTCACAGTTAGCACAGATTTCTACGGTTGAAGGGATAGAGACGCTAAATAAAACAGTCAATACCATTGTTGGCCAAATTGACCAAAGTCAGGCATTACGTGCTACCTCATTGGTTAATCATATGGTGATGATTGCCGGTAATGAAATCAGCGTTGATAAGATTAATAATGGTGAAAACGCTGGATCTGATACAGATATAGATACAGATACAACACCTGATACTCAATTAGATAAGTTACCTGCATCTACTGATGCGACAGATAATGAAAATATCTTCTCCAGCGCCTTTGGTTTTGAATCCTTTAGTCCAATAGATACGCTTACAGTCAATATTACTGATAGTAGTGGGGCTAAAGTTCGCACGATCGAAATGAATTCAAAAATTCTGCCGGATGTTTATCACTTCTTTTGGGATTGCACGGATGATGATGGTAATAAAGTTCCTACTGGAAAATATCAATTTACAGTAAATGCCACATTTAATGATGCGCAAGTCCCAGTAAAAACACTTAAAAGTGCGGTAGTCAATTCCGTTTCTATGAAAGAGGGAAAACCTCATCTTGATGTTGGCCTCGGTGTCATCGTTTCATTGGACGAAATTCGTAAAGTTTTTTAATCAACATTAATTCAATAATGGAGGGCGCATGTCCTTTTCTCAAGCAGTCA