Homologs in group_548

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00705 FBDBKF_00705 100.0 Morganella morganii S1 flgD Flagellar hook-capping protein FlgD
NLDBIP_02620 NLDBIP_02620 100.0 Morganella morganii S4 flgD Flagellar hook-capping protein FlgD
LHKJJB_04135 LHKJJB_04135 100.0 Morganella morganii S3 flgD Flagellar hook-capping protein FlgD
HKOGLL_02910 HKOGLL_02910 100.0 Morganella morganii S5 flgD Flagellar hook-capping protein FlgD
F4V73_RS06715 F4V73_RS06715 81.3 Morganella psychrotolerans - flagellar hook capping FlgD N-terminal domain-containing protein
PMI_RS08065 PMI_RS08065 42.4 Proteus mirabilis HI4320 - flagellar hook assembly protein FlgD

Distribution of the homologs in the orthogroup group_548

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_548

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A1I9 1.83e-40 142 32 5 267 1 flgD Basal-body rod modification protein FlgD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1J0 1.83e-40 142 32 5 267 3 flgD Basal-body rod modification protein FlgD Salmonella typhi
P75936 4.3e-36 131 34 5 237 3 flgD Basal-body rod modification protein FlgD Escherichia coli (strain K12)
Q8K9K7 5.84e-25 102 32 7 240 3 flgD Basal-body rod modification protein FlgD Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57421 7.73e-21 91 29 5 224 3 flgD Basal-body rod modification protein FlgD Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P23455 6.48e-07 51 44 0 47 3 ylxG FlaA locus uncharacterized protein YlxG Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_00840
Feature type CDS
Gene flgD
Product Flagellar hook-capping protein FlgD
Location 189384 - 190190 (strand: 1)
Length 807 (nucleotides) / 268 (amino acids)
In genomic island -

Contig

Accession ZDB_213
Length 680219 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_548
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF03963 Flagellar hook capping protein - N-terminal region
PF13860 FlgD Ig-like domain
PF13861 FlgD Tudor-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1843 Cell motility (N) N Flagellar hook-capping protein FlgD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02389 flagellar basal-body rod modification protein FlgD Flagellar assembly -

Protein Sequence

MGINAATNDPVNNDIDAQKKPQKSQSDDMRDTFLKMIVTQMQNQDPTKPMDNTDLTSQLAQIATLESMNSLNDSVSGISKQINSGQSLQATQLVGKNVLIPGSDLVLVPTGDGTTRVKADNPPPGDDTSIAPFADDNGGDDSSGSGFESSPFGFFLAKPADKIEITIRDRNKGIVRTITIDGETKPDIYDKTWDGRNDNGDLVADTKGKYTFEVKATMKGEEIPKSGVVRLKYAKVNGVTPGADAPLLDVGIGNSVLLSEIFKVYPSN

Flanking regions ( +/- flanking 50bp)

AAAGTGCTGTTGCAGAAAACCTTAACCCTCGGACAGTAACGGAGTGAGTCATGGGGATTAATGCAGCAACCAATGATCCGGTCAATAACGACATTGATGCGCAGAAAAAGCCGCAAAAAAGTCAGAGTGACGATATGCGGGACACCTTTCTGAAAATGATCGTCACGCAGATGCAGAACCAGGATCCGACCAAACCGATGGATAACACGGATCTGACCAGTCAGCTGGCACAAATCGCCACCCTGGAAAGCATGAACAGCCTGAATGACAGTGTCAGTGGTATTTCAAAACAAATTAACTCCGGACAGTCATTACAGGCAACACAACTGGTCGGGAAAAATGTCCTGATCCCGGGCAGCGACCTGGTCCTGGTACCAACCGGTGACGGCACCACCCGTGTGAAAGCCGATAACCCGCCGCCGGGTGATGACACATCAATTGCGCCGTTTGCGGATGATAACGGTGGTGATGACAGCAGCGGCAGCGGATTTGAATCCTCGCCGTTCGGTTTCTTCCTCGCCAAACCGGCGGACAAAATTGAGATAACCATCCGCGACAGAAATAAAGGAATTGTCAGAACCATCACGATTGACGGTGAAACCAAACCGGATATCTACGACAAGACCTGGGACGGCCGCAATGACAACGGTGATCTGGTTGCCGATACCAAAGGAAAATACACCTTTGAGGTAAAAGCCACTATGAAGGGTGAAGAGATCCCGAAAAGCGGCGTCGTCAGACTGAAATACGCGAAAGTGAATGGCGTGACACCGGGAGCGGATGCACCGCTGCTGGATGTGGGCATAGGCAACAGCGTGCTGCTGTCTGAAATCTTTAAAGTGTATCCGTCAAATTAATAAGCAAACCCAATTGTCATGGAGGTGACATGTCTTTTTCACAAGCAGTC