PF13534


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13534, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13534
Description 4Fe-4S dicluster domain

Occurence in the database

PF13534 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2746 FBDBKF_07615 34404 35756 1 rnfC Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit Morganella morganii S1
1 group_1520 FBDBKF_09825 61954 62670 -1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S1
2 group_1520 EHELCC_04625 253919 254635 -1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S2
3 group_2746 EHELCC_13445 8598 9950 1 rnfC Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit Morganella morganii S2
4 group_1520 NLDBIP_04625 253715 254431 -1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S4
5 group_2746 NLDBIP_13890 29473 30825 1 rnfC Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit Morganella morganii S4
6 group_2746 LHKJJB_08960 128924 130276 -1 rnfC Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit Morganella morganii S3
7 group_1520 LHKJJB_14005 80947 81663 1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S3
8 group_2746 HKOGLL_08510 128924 130276 -1 rnfC Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit Morganella morganii S5
9 group_1520 HKOGLL_12530 62735 63451 -1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S5
10 group_1520 F4V73_RS00520 109761 110477 1 succinate dehydrogenase iron-sulfur subunit Morganella psychrotolerans
11 group_2746 F4V73_RS13505 335006 336358 -1 SLBB domain-containing protein Morganella psychrotolerans
12 group_1520 PMI_RS02795 612788 613504 1 succinate dehydrogenase iron-sulfur subunit Proteus mirabilis HI4320