PF13438


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13438, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13438
Description Domain of unknown function (DUF4113)

Occurence in the database

PF13438 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2995 FBDBKF_17330 42238 43500 -1 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair Morganella morganii S1
1 group_3609 FBDBKF_20095 4656 4946 1 DUF4113 domain-containing protein Morganella morganii S1
2 group_2995 EHELCC_01560 312001 313263 1 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair Morganella morganii S2
3 group_3609 EHELCC_19370 7751 8041 -1 DUF4113 domain-containing protein Morganella morganii S2
4 group_2995 NLDBIP_01900 366873 368135 -1 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair Morganella morganii S4
5 group_3609 NLDBIP_19500 7751 8041 -1 DUF4113 domain-containing protein Morganella morganii S4
6 group_2995 LHKJJB_00135 24550 25812 1 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair Morganella morganii S3
7 group_3609 LHKJJB_19450 4906 5196 1 DUF4113 domain-containing protein Morganella morganii S3
8 group_2995 HKOGLL_00175 30061 31323 1 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair Morganella morganii S5
9 group_3609 HKOGLL_19380 7751 8041 -1 DUF4113 domain-containing protein Morganella morganii S5
10 group_2995 PMI_RS12285 2725243 2726511 1 umuC translesion error-prone DNA polymerase V subunit UmuC Proteus mirabilis HI4320