PF13432


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13432, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13432
Description Tetratricopeptide repeat

Occurence in the database

PF13432 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1409 FBDBKF_08700 121484 122371 1 nlpI lipoprotein NlpI Morganella morganii S1
1 group_1504 FBDBKF_09730 42692 43471 -1 cpoB cell division protein CpoB Morganella morganii S1
2 group_1504 EHELCC_04530 234657 235436 -1 cpoB cell division protein CpoB Morganella morganii S2
3 group_1409 EHELCC_12825 41354 42241 -1 nlpI lipoprotein NlpI Morganella morganii S2
4 group_1504 NLDBIP_04530 234453 235232 -1 cpoB cell division protein CpoB Morganella morganii S4
5 group_1409 NLDBIP_13165 41354 42241 -1 nlpI lipoprotein NlpI Morganella morganii S4
6 group_1409 LHKJJB_13390 120202 121089 1 nlpI lipoprotein NlpI Morganella morganii S3
7 group_1504 LHKJJB_14100 100146 100925 1 cpoB cell division protein CpoB Morganella morganii S3
8 group_1409 HKOGLL_11640 41354 42241 -1 nlpI lipoprotein NlpI Morganella morganii S5
9 group_1504 HKOGLL_12435 43473 44252 -1 cpoB cell division protein CpoB Morganella morganii S5
10 group_1504 F4V73_RS00610 129138 129932 1 cpoB cell division protein CpoB Morganella psychrotolerans
11 group_935 F4V73_RS05535 1176313 1177482 -1 lapB lipopolysaccharide assembly protein LapB Morganella psychrotolerans
12 group_1409 F4V73_RS09920 88668 89555 1 nlpI lipoprotein NlpI Morganella psychrotolerans
13 group_3902 PMI_RS15340 3404776 3408462 1 cellulose biosynthesis protein BcsC Proteus mirabilis HI4320