Orthogroup:group_1465


Homologs in group_1465

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09400 FBDBKF_09400 Morganella morganii S1 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
EHELCC_10010 EHELCC_10010 Morganella morganii S2 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
NLDBIP_10355 NLDBIP_10355 Morganella morganii S4 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
LHKJJB_11000 LHKJJB_11000 Morganella morganii S3 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
HKOGLL_14060 HKOGLL_14060 Morganella morganii S5 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
F4V73_RS10565 F4V73_RS10565 Morganella psychrotolerans potD spermidine/putrescine ABC transporter substrate-binding protein PotD
PMI_RS13475 PMI_RS13475 Proteus mirabilis HI4320 potD spermidine/putrescine ABC transporter substrate-binding protein PotD

Distribution of group_1465 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1465 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1465

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1465.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 potD 7

Product

# Product Occurence
1 spermidine/putrescine ABC transporter substrate-binding protein PotD 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0687 7 E Amino acid transport and metabolism (E) Spermidine/putrescine-binding periplasmic protein

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11069 7 spermidine/putrescine transport system substrate-binding protein ABC transporters -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF13416 7 Bacterial extracellular solute-binding protein

Annotations of the 17 SwissProt hits

Annotation Number of occurrences
Bifunctional polyhydroxybutyrate synthase / ABC transporter periplasmic binding protein 1
Gamma-aminobutyric acid-binding protein 1
Norspermidine sensor 1
Putrescine-binding periplasmic protein PotF 1
Putrescine-binding periplasmic protein SpuD 2
Putrescine/agmatine-binding protein 1
Putrescine/cadaverine-binding protein 1
Spermidine-binding periplasmic protein SpuE 1
Spermidine/putrescine-binding periplasmic protein 4
Spermidine/putrescine-binding periplasmic protein 1 1
Spermidine/putrescine-binding periplasmic protein 2 1
Uncharacterized lipoprotein MG045 homolog 1
Uncharacterized protein HI_0131 1

Protein length

Unique protein length 347

Protein length distribution