PF13416


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13416, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13416
Description Bacterial extracellular solute-binding protein

Occurence in the database

PF13416 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1465 FBDBKF_09400 109467 110510 -1 potD spermidine/putrescine ABC transporter substrate-binding protein PotD Morganella morganii S1
1 group_1465 EHELCC_10010 35594 36637 1 potD spermidine/putrescine ABC transporter substrate-binding protein PotD Morganella morganii S2
2 group_1465 NLDBIP_10355 13865 14908 1 potD spermidine/putrescine ABC transporter substrate-binding protein PotD Morganella morganii S4
3 group_1465 LHKJJB_11000 176620 177663 -1 potD spermidine/putrescine ABC transporter substrate-binding protein PotD Morganella morganii S3
4 group_1465 HKOGLL_14060 109921 110964 -1 potD spermidine/putrescine ABC transporter substrate-binding protein PotD Morganella morganii S5
5 group_1465 F4V73_RS10565 244589 245632 1 potD spermidine/putrescine ABC transporter substrate-binding protein PotD Morganella psychrotolerans
6 group_1465 PMI_RS13475 2985066 2986109 -1 potD spermidine/putrescine ABC transporter substrate-binding protein PotD Proteus mirabilis HI4320
7 group_4736 PMI_RS18000 3954571 3955875 -1 ugpB sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB Proteus mirabilis HI4320