Homologs in group_4736

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4736

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4736

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q66FU7 5.61e-158 456 52 5 434 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Yersinia pseudotuberculosis serotype I (strain IP32953)
Q6CZ31 2.52e-157 454 52 4 427 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q1CNC9 3.74e-157 454 52 5 434 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Yersinia pestis bv. Antiqua (strain Nepal516)
Q7CKV7 3.74e-157 454 52 5 434 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Yersinia pestis
Q1CBH5 3.74e-157 454 52 5 434 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Yersinia pestis bv. Antiqua (strain Antiqua)
Q0SZL9 5.85e-153 443 52 4 415 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Shigella flexneri serotype 5b (strain 8401)
P0AG80 4.75e-152 441 52 4 415 1 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Escherichia coli (strain K12)
P0AG81 4.75e-152 441 52 4 415 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Escherichia coli O157:H7
Q7CPK0 9.43e-152 440 50 5 430 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8XG55 9.43e-152 440 50 5 430 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Salmonella typhi
Q5PJK8 1.15e-151 440 50 5 430 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Salmonella paratyphi A (strain ATCC 9150 / SARB42)
A1JID7 1.82e-151 439 50 5 431 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q1R5H5 3.16e-151 439 51 4 415 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Escherichia coli (strain UTI89 / UPEC)
Q8CVL9 3.16e-151 439 51 4 415 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TC07 3.16e-151 439 51 4 415 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q83PU5 6.08e-151 438 51 4 415 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Shigella flexneri
A1AGY4 9.61e-151 437 51 4 415 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Escherichia coli O1:K1 / APEC
Q57IS0 2.62e-150 436 50 5 430 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Salmonella choleraesuis (strain SC-B67)
Q32AT3 2.89e-150 436 51 4 415 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Shigella dysenteriae serotype 1 (strain Sd197)
Q8YCA7 4.94e-146 426 49 5 422 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q8FW10 6.48e-146 425 49 5 422 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Brucella suis biovar 1 (strain 1330)
Q578E6 6.62e-146 425 49 5 422 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Brucella abortus biovar 1 (strain 9-941)
Q2YKR5 6.62e-146 425 49 5 422 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Brucella abortus (strain 2308)
Q926H8 6.63e-142 415 47 6 427 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Rhizobium meliloti (strain 1021)
Q8UB32 1.04e-141 414 47 6 436 3 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB Agrobacterium fabrum (strain C58 / ATCC 33970)
Q8FVS7 4.27e-05 49 46 0 45 3 BRA0748 Putative binding protein BRA0748/BS1330_II0741 Brucella suis biovar 1 (strain 1330)
Q2YKZ9 4.27e-05 49 46 0 45 3 BAB2_0491 Putative binding protein BAB2_0491 Brucella abortus (strain 2308)
Q578M8 4.27e-05 49 46 0 45 3 BruAb2_0484 Putative binding protein BruAb2_0484 Brucella abortus biovar 1 (strain 9-941)
Q7LYW7 7.76e-05 48 23 3 157 1 malE Trehalose/maltose-binding protein MalE Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C)
Q9RUE8 0.000135 47 42 0 47 1 DR_1438 Probable ABC transporter-binding protein DR_1438 Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18000
Feature type CDS
Gene ugpB
Product sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB
Location 3954571 - 3955875 (strand: -1)
Length 1305 (nucleotides) / 434 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4736
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF13416 Bacterial extracellular solute-binding protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1653 Carbohydrate transport and metabolism (G) G ABC-type glycerol-3-phosphate transport system, periplasmic component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05813 sn-glycerol 3-phosphate transport system substrate-binding protein ABC transporters -

Protein Sequence

MSIKSFSTLAIAIALFTSPTYAKTEIEWWHAMGGALGQKVNQIASDFNASQSEYVIKPVYKGTYPETMTSAVAAFRAKNQPAIVQVFEVGTASMMGAKKAVFPVYQLMEKTNEPFDPNSYLSTVTAYYTTSDGKMISLPFNSSTPVLYYNKALFKQAGIEQPPKTWKEMGAVSQKLLDAGVKCGFTTTWQSWTQIENFGARNNLPIATKNNGFDGTDTSFLFNQAPFVTHIQRMADWSKSGIFKYGGRQSDAMPLFYTQECAMVMESSAGFAGIKENMKGIDIGVSQLPYDDTLVDKPANSIIGGASLWVMAGRPDAEYNGVAKFFTYLSSPEVQADWHQATGYLPVTKAAYALTQQQGFYQQNPGADTAILQMTTSDSTANSKGLRFGNFLQTREIVDEELEKVWSGKQSAQAALDNAVKRGNEQLRRFERTQ

Flanking regions ( +/- flanking 50bp)

TTCTTAAATTAGATTGCGCCTTTCGTATTTAAATAAAAAGGAAATTTTGCATGTCGATTAAATCCTTCAGTACGCTTGCCATAGCAATAGCATTATTTACTTCACCAACCTACGCAAAAACCGAAATAGAGTGGTGGCATGCTATGGGGGGCGCCTTAGGTCAAAAAGTCAATCAAATTGCCTCAGACTTTAATGCCAGCCAATCAGAATATGTGATCAAACCTGTCTATAAAGGGACTTATCCAGAAACGATGACCAGCGCTGTTGCTGCATTTCGAGCCAAAAACCAACCTGCGATTGTTCAAGTGTTTGAGGTGGGAACAGCAAGTATGATGGGAGCTAAAAAAGCCGTTTTTCCTGTTTACCAATTAATGGAAAAAACCAACGAGCCATTTGATCCTAATAGCTACCTCTCGACAGTTACCGCTTATTACACCACCAGCGATGGTAAGATGATATCTCTACCTTTTAATAGCTCAACGCCTGTGCTTTATTACAACAAAGCACTATTTAAACAAGCAGGCATAGAGCAACCTCCTAAAACATGGAAAGAGATGGGGGCTGTCTCTCAGAAACTACTTGATGCTGGCGTGAAATGTGGTTTTACCACCACTTGGCAATCATGGACCCAAATAGAGAATTTTGGCGCTCGTAATAACTTACCTATCGCCACCAAAAATAACGGCTTTGATGGGACTGATACCTCATTTTTATTTAATCAGGCACCGTTTGTTACTCATATCCAACGCATGGCGGATTGGTCTAAATCCGGTATTTTTAAATATGGTGGCCGCCAATCTGATGCTATGCCGCTATTTTATACTCAAGAATGCGCCATGGTGATGGAGTCATCTGCAGGCTTTGCGGGTATTAAAGAGAATATGAAAGGCATTGATATTGGTGTTAGCCAATTGCCTTATGACGATACTTTAGTTGATAAACCTGCTAATAGCATTATCGGAGGTGCCTCATTATGGGTAATGGCAGGTCGCCCTGATGCTGAATATAACGGTGTCGCTAAATTCTTTACCTATCTTTCTAGCCCTGAAGTACAAGCAGATTGGCATCAAGCAACCGGTTATTTACCTGTGACGAAAGCAGCTTATGCATTAACACAACAACAGGGGTTCTATCAGCAAAATCCTGGTGCTGATACGGCTATTTTACAAATGACCACCTCTGACTCTACAGCAAACTCAAAAGGCTTGCGCTTTGGTAACTTTTTACAAACGCGAGAAATCGTCGATGAAGAATTAGAAAAAGTGTGGTCAGGCAAACAGAGCGCTCAAGCCGCCTTGGATAATGCGGTTAAACGGGGAAATGAACAACTACGCCGATTTGAACGCACTCAGTAAGGTATTTGGTATTCGGCGAACATCAATAAGTGTTCGCCTGTTATTTTGTC