Homologs in group_1465

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09400 FBDBKF_09400 92.8 Morganella morganii S1 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
EHELCC_10010 EHELCC_10010 92.8 Morganella morganii S2 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
NLDBIP_10355 NLDBIP_10355 92.8 Morganella morganii S4 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
LHKJJB_11000 LHKJJB_11000 92.8 Morganella morganii S3 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
HKOGLL_14060 HKOGLL_14060 92.8 Morganella morganii S5 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
PMI_RS13475 PMI_RS13475 78.1 Proteus mirabilis HI4320 potD spermidine/putrescine ABC transporter substrate-binding protein PotD

Distribution of the homologs in the orthogroup group_1465

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1465

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFL0 0.0 553 77 1 348 3 potD Spermidine/putrescine-binding periplasmic protein Shigella flexneri
P0AFK9 0.0 553 77 1 348 1 potD Spermidine/putrescine-binding periplasmic protein Escherichia coli (strain K12)
P0A2C7 0.0 553 77 1 348 3 potD Spermidine/putrescine-binding periplasmic protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2C8 0.0 553 77 1 348 3 potD Spermidine/putrescine-binding periplasmic protein Salmonella typhi
P45168 6.56e-128 373 50 2 360 3 potD-B Spermidine/putrescine-binding periplasmic protein 1 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44731 2.25e-126 369 53 1 334 3 potD-A Spermidine/putrescine-binding periplasmic protein 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9I6J1 1.14e-66 217 35 7 367 1 spuD Putrescine-binding periplasmic protein SpuD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q02UB7 1.14e-66 217 35 7 367 1 spuD Putrescine-binding periplasmic protein SpuD Pseudomonas aeruginosa (strain UCBPP-PA14)
P31133 2.8e-60 201 34 8 367 1 potF Putrescine-binding periplasmic protein PotF Escherichia coli (strain K12)
Q9I6J0 7.04e-59 197 34 7 339 1 spuE Spermidine-binding periplasmic protein SpuE Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I0P5 9.53e-48 168 31 5 312 1 PA2592 Putrescine/agmatine-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HY16 6.83e-44 157 30 4 304 1 potD Putrescine/cadaverine-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9KU25 2.64e-15 79 23 7 303 3 nspS Norspermidine sensor Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P76108 2.7e-07 55 24 10 275 1 ydcS Bifunctional polyhydroxybutyrate synthase / ABC transporter periplasmic binding protein Escherichia coli (strain K12)
P75056 4.41e-07 55 25 18 346 3 MPN_058 Uncharacterized lipoprotein MG045 homolog Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P43951 0.000405 45 22 10 292 1 HI_0131 Uncharacterized protein HI_0131 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10565
Feature type CDS
Gene potD
Product spermidine/putrescine ABC transporter substrate-binding protein PotD
Location 244589 - 245632 (strand: 1)
Length 1044 (nucleotides) / 347 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1465
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13416 Bacterial extracellular solute-binding protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0687 Amino acid transport and metabolism (E) E Spermidine/putrescine-binding periplasmic protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11069 spermidine/putrescine transport system substrate-binding protein ABC transporters -

Protein Sequence

MKKWSLLLGAGILAAGISSASADNSKTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNESMYTKLKTYKDGAYDLVVPSTYFVAKMRHEGMLQKIDKSKLSHFSNLDPNLLHKPFDSENDYSVPYIWGATAIGINGDEITPGSVTSWRDLWKPEYKNSLLLTDDAREVFQIALSKLGYSANTTNPQEIEEAYKELQALRPNILAFNSDNPANPFMEGEVNVGMIWNGSAYVARQSGLNIEVIWPSEGGIFWMDSLAIPANAKNPEGAHQLINFLLRPEIAAQVAQAIGYPTPNLAAKALLPAEIANDKSLYPDDETIHKGQWQDDVGDSSVLYERYYQKLKAGR

Flanking regions ( +/- flanking 50bp)

CGCCTGTGATATTCATCGACTAACCCGAAGCTCTGAGGGGAAACACTGAAATGAAAAAGTGGTCCTTGCTGCTTGGTGCCGGTATTCTGGCAGCAGGCATAAGTTCAGCATCAGCAGATAACAGTAAAACGCTTTATTTCTATAACTGGACTGAATATGTCCCGCCCGGATTGTTAGAACAGTTTACAAAAGAGACGGGGATCAAGGTTATCTATTCAACCTATGAATCCAACGAAAGCATGTATACCAAGCTAAAAACCTATAAAGACGGTGCTTATGATTTGGTGGTGCCGTCGACGTATTTTGTCGCCAAAATGCGTCATGAGGGTATGCTGCAAAAAATAGATAAATCAAAACTCAGCCACTTTAGTAACCTGGACCCCAATCTGCTGCATAAACCGTTTGATTCTGAAAATGATTACTCTGTTCCGTATATCTGGGGTGCGACTGCTATCGGTATTAATGGCGATGAGATTACCCCGGGATCAGTAACATCATGGCGTGATCTGTGGAAACCGGAATATAAAAATAGTCTGCTACTGACCGATGATGCCCGTGAAGTGTTCCAGATAGCACTCAGCAAGCTGGGTTATTCTGCCAATACCACTAACCCTCAGGAAATTGAGGAAGCGTATAAAGAGCTTCAGGCGCTGCGTCCGAACATCCTCGCGTTTAATTCTGACAACCCGGCTAACCCGTTTATGGAAGGGGAGGTTAACGTGGGTATGATCTGGAACGGTTCTGCTTATGTTGCCCGTCAGTCCGGTTTGAATATTGAAGTTATCTGGCCTTCAGAGGGCGGTATTTTCTGGATGGACAGTCTGGCAATACCGGCAAATGCCAAAAATCCGGAAGGTGCCCATCAGTTGATTAATTTCCTGTTGCGCCCTGAAATTGCAGCGCAGGTTGCACAGGCCATTGGTTATCCGACACCAAATCTTGCCGCGAAGGCATTGTTACCGGCAGAGATAGCGAATGATAAGTCCCTCTATCCTGACGATGAAACTATTCATAAAGGACAGTGGCAGGATGACGTTGGCGACAGCAGTGTGCTGTATGAGCGCTATTATCAGAAACTGAAAGCAGGTCGTTAATTTCACTAATCAATTGATTTTATGTTATAGATAGCAAAAGGCGCTCTCAG