PF13407

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF13407
Protein list: lists the 45 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF13407
Description Periplasmic binding protein domain

Occurence in the database

PF13407 is associated with 45 different proteins
The 45 proteins are classified into 7 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2535 FBDBKF_01860 59707 60681 -1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S1
1 group_2547 FBDBKF_02175 123754 124770 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S1
2 group_242 FBDBKF_04385 67234 68238 -1 cra catabolite repressor/activator Morganella morganii S1
3 group_3238 FBDBKF_04500 94714 95709 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S1
4 group_2690 FBDBKF_04680 137819 138820 -1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S1
5 group_2692 FBDBKF_04710 144934 145935 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S1
6 group_357 FBDBKF_15400 5227 6117 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S1
7 group_2535 EHELCC_02330 447527 448501 -1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S2
8 group_2547 EHELCC_02645 511574 512590 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S2
9 group_242 EHELCC_05675 126691 127695 -1 cra catabolite repressor/activator Morganella morganii S2
10 group_3238 EHELCC_05790 154171 155166 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S2
11 group_2690 EHELCC_05970 197276 198277 -1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S2
12 group_2692 EHELCC_06000 204391 205392 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S2
13 group_357 EHELCC_15760 4527 5417 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S2
14 group_2547 NLDBIP_00815 167546 168562 1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S4
15 group_2535 NLDBIP_01130 231635 232609 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S4
16 group_242 NLDBIP_05995 167756 168760 -1 cra catabolite repressor/activator Morganella morganii S4
17 group_3238 NLDBIP_06110 195236 196231 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S4
18 group_2690 NLDBIP_06290 238341 239342 -1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S4
19 group_2692 NLDBIP_06320 245456 246457 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S4
20 group_357 NLDBIP_16610 75246 76136 1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S4
21 group_2535 LHKJJB_00905 160076 161050 -1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S3
22 group_2547 LHKJJB_01220 224123 225139 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S3
23 group_242 LHKJJB_02875 145280 146284 -1 cra catabolite repressor/activator Morganella morganii S3
24 group_3238 LHKJJB_02990 172760 173755 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S3
25 group_2690 LHKJJB_03170 215865 216866 -1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S3
26 group_2692 LHKJJB_03200 222980 223981 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S3
27 group_357 LHKJJB_16195 4527 5417 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S3
28 group_2535 HKOGLL_00945 165587 166561 -1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S5
29 group_2547 HKOGLL_01260 229634 230650 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella morganii S5
30 group_242 HKOGLL_06350 67144 68148 -1 cra catabolite repressor/activator Morganella morganii S5
31 group_3238 HKOGLL_06465 94624 95619 1 mglB galactose/glucose ABC transporter substrate-binding protein MglB Morganella morganii S5
32 group_2690 HKOGLL_06645 137729 138730 -1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S5
33 group_2692 HKOGLL_06675 144844 145845 1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain Morganella morganii S5
34 group_357 HKOGLL_15965 4527 5417 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella morganii S5
35 group_2535 F4V73_RS04205 889580 890554 -1 substrate-binding domain-containing protein Morganella psychrotolerans
36 group_2547 F4V73_RS04545 960415 961431 -1 lsrB autoinducer 2 ABC transporter substrate-binding protein LsrB Morganella psychrotolerans
37 group_242 F4V73_RS08830 1828363 1829367 -1 cra catabolite repressor/activator Morganella psychrotolerans
38 group_357 F4V73_RS09115 1906365 1907291 -1 substrate-binding domain-containing protein Morganella psychrotolerans
39 group_2690 F4V73_RS09155 1916554 1917555 -1 LacI family DNA-binding transcriptional regulator Morganella psychrotolerans
40 group_2692 F4V73_RS09185 1923961 1924920 1 substrate-binding domain-containing protein Morganella psychrotolerans
41 group_357 F4V73_RS17745 190969 191859 1 rbsB ribose ABC transporter substrate-binding protein RbsB Morganella psychrotolerans
42 group_357 PMI_RS00430 116397 117287 -1 rbsB ribose ABC transporter substrate-binding protein RbsB Proteus mirabilis HI4320
43 group_242 PMI_RS10250 2245002 2246009 -1 cra catabolite repressor/activator Proteus mirabilis HI4320
44 group_242 PMI_RS14505 3216187 3217191 -1 LacI family DNA-binding transcriptional regulator Proteus mirabilis HI4320