PF13361


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13361, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 30 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13361
Description UvrD-like helicase C-terminal domain

Occurence in the database

PF13361 is associated with 30 different proteins (see tab "Protein list" and "Profile")
The 30 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1083 FBDBKF_06155 53570 57187 -1 recB exodeoxyribonuclease V subunit beta Morganella morganii S1
1 group_1262 FBDBKF_07360 157341 159395 1 helD DNA helicase IV Morganella morganii S1
2 group_188 FBDBKF_08195 14395 16425 1 rep DNA helicase Rep Morganella morganii S1
3 group_1350 FBDBKF_08365 47532 49694 1 uvrD DNA helicase II Morganella morganii S1
4 group_1262 EHELCC_03610 26791 28845 -1 helD DNA helicase IV Morganella morganii S2
5 group_1083 EHELCC_09200 54142 57759 -1 recB exodeoxyribonuclease V subunit beta Morganella morganii S2
6 group_1350 EHELCC_13160 114031 116193 -1 uvrD DNA helicase II Morganella morganii S2
7 group_188 EHELCC_13330 147300 149330 -1 rep DNA helicase Rep Morganella morganii S2
8 group_1262 NLDBIP_03610 26587 28641 -1 helD DNA helicase IV Morganella morganii S4
9 group_1083 NLDBIP_09580 54142 57759 -1 recB exodeoxyribonuclease V subunit beta Morganella morganii S4
10 group_1350 NLDBIP_13500 114031 116193 -1 uvrD DNA helicase II Morganella morganii S4
11 group_188 NLDBIP_13670 147300 149330 -1 rep DNA helicase Rep Morganella morganii S4
12 group_1083 LHKJJB_08175 159479 163096 1 recB exodeoxyribonuclease V subunit beta Morganella morganii S3
13 group_1262 LHKJJB_09440 26701 28755 -1 helD DNA helicase IV Morganella morganii S3
14 group_188 LHKJJB_12885 13113 15143 1 rep DNA helicase Rep Morganella morganii S3
15 group_1350 LHKJJB_13055 46250 48412 1 uvrD DNA helicase II Morganella morganii S3
16 group_1083 HKOGLL_07725 159479 163096 1 recB exodeoxyribonuclease V subunit beta Morganella morganii S5
17 group_1262 HKOGLL_09535 162297 164351 1 helD DNA helicase IV Morganella morganii S5
18 group_1350 HKOGLL_11975 114031 116193 -1 uvrD DNA helicase II Morganella morganii S5
19 group_188 HKOGLL_12145 147300 149330 -1 rep DNA helicase Rep Morganella morganii S5
20 group_1262 F4V73_RS01545 345816 347870 1 helD DNA helicase IV Morganella psychrotolerans
21 group_1350 F4V73_RS09565 12237 14408 1 uvrD DNA helicase II Morganella psychrotolerans
22 group_1083 F4V73_RS15760 156965 160579 1 recB exodeoxyribonuclease V subunit beta Morganella psychrotolerans
23 group_188 F4V73_RS18740 15282 17303 1 rep DNA helicase Rep Morganella psychrotolerans
24 group_1262 PMI_RS03875 878588 880639 1 helD DNA helicase IV Proteus mirabilis HI4320
25 group_1083 PMI_RS11420 2511725 2515363 -1 recB exodeoxyribonuclease V subunit beta Proteus mirabilis HI4320
26 group_188 PMI_RS12040 2662014 2663906 -1 ATP-dependent helicase Proteus mirabilis HI4320
27 group_188 PMI_RS12245 2704877 2707003 -1 UvrD-helicase domain-containing protein Proteus mirabilis HI4320
28 group_188 PMI_RS16455 3627528 3629549 1 rep DNA helicase Rep Proteus mirabilis HI4320
29 group_1350 PMI_RS16615 3661795 3663951 1 uvrD DNA helicase II Proteus mirabilis HI4320