Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13361, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 30 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF13361 |
---|---|
Description | UvrD-like helicase C-terminal domain |
Occurence in the database
PF13361 is associated with 30 different proteins (see tab "Protein list" and "Profile") |
The 30 proteins are classified into 4 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_1083 | FBDBKF_06155 | 53570 | 57187 | -1 | recB | exodeoxyribonuclease V subunit beta | Morganella morganii S1 |
1 | group_1262 | FBDBKF_07360 | 157341 | 159395 | 1 | helD | DNA helicase IV | Morganella morganii S1 |
2 | group_188 | FBDBKF_08195 | 14395 | 16425 | 1 | rep | DNA helicase Rep | Morganella morganii S1 |
3 | group_1350 | FBDBKF_08365 | 47532 | 49694 | 1 | uvrD | DNA helicase II | Morganella morganii S1 |
4 | group_1262 | EHELCC_03610 | 26791 | 28845 | -1 | helD | DNA helicase IV | Morganella morganii S2 |
5 | group_1083 | EHELCC_09200 | 54142 | 57759 | -1 | recB | exodeoxyribonuclease V subunit beta | Morganella morganii S2 |
6 | group_1350 | EHELCC_13160 | 114031 | 116193 | -1 | uvrD | DNA helicase II | Morganella morganii S2 |
7 | group_188 | EHELCC_13330 | 147300 | 149330 | -1 | rep | DNA helicase Rep | Morganella morganii S2 |
8 | group_1262 | NLDBIP_03610 | 26587 | 28641 | -1 | helD | DNA helicase IV | Morganella morganii S4 |
9 | group_1083 | NLDBIP_09580 | 54142 | 57759 | -1 | recB | exodeoxyribonuclease V subunit beta | Morganella morganii S4 |
10 | group_1350 | NLDBIP_13500 | 114031 | 116193 | -1 | uvrD | DNA helicase II | Morganella morganii S4 |
11 | group_188 | NLDBIP_13670 | 147300 | 149330 | -1 | rep | DNA helicase Rep | Morganella morganii S4 |
12 | group_1083 | LHKJJB_08175 | 159479 | 163096 | 1 | recB | exodeoxyribonuclease V subunit beta | Morganella morganii S3 |
13 | group_1262 | LHKJJB_09440 | 26701 | 28755 | -1 | helD | DNA helicase IV | Morganella morganii S3 |
14 | group_188 | LHKJJB_12885 | 13113 | 15143 | 1 | rep | DNA helicase Rep | Morganella morganii S3 |
15 | group_1350 | LHKJJB_13055 | 46250 | 48412 | 1 | uvrD | DNA helicase II | Morganella morganii S3 |
16 | group_1083 | HKOGLL_07725 | 159479 | 163096 | 1 | recB | exodeoxyribonuclease V subunit beta | Morganella morganii S5 |
17 | group_1262 | HKOGLL_09535 | 162297 | 164351 | 1 | helD | DNA helicase IV | Morganella morganii S5 |
18 | group_1350 | HKOGLL_11975 | 114031 | 116193 | -1 | uvrD | DNA helicase II | Morganella morganii S5 |
19 | group_188 | HKOGLL_12145 | 147300 | 149330 | -1 | rep | DNA helicase Rep | Morganella morganii S5 |
20 | group_1262 | F4V73_RS01545 | 345816 | 347870 | 1 | helD | DNA helicase IV | Morganella psychrotolerans |
21 | group_1350 | F4V73_RS09565 | 12237 | 14408 | 1 | uvrD | DNA helicase II | Morganella psychrotolerans |
22 | group_1083 | F4V73_RS15760 | 156965 | 160579 | 1 | recB | exodeoxyribonuclease V subunit beta | Morganella psychrotolerans |
23 | group_188 | F4V73_RS18740 | 15282 | 17303 | 1 | rep | DNA helicase Rep | Morganella psychrotolerans |
24 | group_1262 | PMI_RS03875 | 878588 | 880639 | 1 | helD | DNA helicase IV | Proteus mirabilis HI4320 |
25 | group_1083 | PMI_RS11420 | 2511725 | 2515363 | -1 | recB | exodeoxyribonuclease V subunit beta | Proteus mirabilis HI4320 |
26 | group_188 | PMI_RS12040 | 2662014 | 2663906 | -1 | ATP-dependent helicase | Proteus mirabilis HI4320 | |
27 | group_188 | PMI_RS12245 | 2704877 | 2707003 | -1 | UvrD-helicase domain-containing protein | Proteus mirabilis HI4320 | |
28 | group_188 | PMI_RS16455 | 3627528 | 3629549 | 1 | rep | DNA helicase Rep | Proteus mirabilis HI4320 |
29 | group_1350 | PMI_RS16615 | 3661795 | 3663951 | 1 | uvrD | DNA helicase II | Proteus mirabilis HI4320 |