Orthogroup:group_1406


Homologs in group_1406

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08680 FBDBKF_08680 Morganella morganii S1 truB tRNA pseudouridine(55) synthase TruB
EHELCC_12845 EHELCC_12845 Morganella morganii S2 truB tRNA pseudouridine(55) synthase TruB
NLDBIP_13185 NLDBIP_13185 Morganella morganii S4 truB tRNA pseudouridine(55) synthase TruB
LHKJJB_13370 LHKJJB_13370 Morganella morganii S3 truB tRNA pseudouridine(55) synthase TruB
HKOGLL_11660 HKOGLL_11660 Morganella morganii S5 truB tRNA pseudouridine(55) synthase TruB
F4V73_RS09905 F4V73_RS09905 Morganella psychrotolerans truB tRNA pseudouridine(55) synthase TruB
PMI_RS17035 PMI_RS17035 Proteus mirabilis HI4320 truB tRNA pseudouridine(55) synthase TruB

Distribution of group_1406 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1406 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1406

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1406.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 truB 7

Product

# Product Occurence
1 tRNA pseudouridine(55) synthase TruB 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0130 7 J Translation, ribosomal structure and biogenesis (J) tRNA U55 pseudouridine synthase TruB, may also work on U342 of tmRNA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03177 7 tRNA pseudouridine55 synthase [EC:5.4.99.25] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01509 7 TruB family pseudouridylate synthase (N terminal domain)
PF09157 7 Pseudouridine synthase II TruB, C-terminal
PF16198 7 tRNA pseudouridylate synthase B C-terminal domain

Annotations of the 507 SwissProt hits

Annotation Number of occurrences
H/ACA ribonucleoprotein complex subunit CBF5 3
H/ACA ribonucleoprotein complex subunit cbf5 1
Probable tRNA pseudouridine synthase B 33
Pseudouridylate synthase TRUB1 3
Putative H/ACA ribonucleoprotein complex subunit 4 2
Putative tRNA pseudouridine synthase B 1
tRNA pseudouridine synthase 4 2
tRNA pseudouridine synthase B 461
tRNA pseudouridine synthase B (Fragment) 1

Protein length

Min length 314
Max length 318
Mean length (sd) 315.1 (2.0)
Median length 314.0

Protein length distribution