PF13333


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13333, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13333
Description Integrase core domain

Occurence in the database

PF13333 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3432 FBDBKF_14445 87763 88617 -1 Integrase catalytic domain-containing protein Morganella morganii S1
1 group_127 FBDBKF_14510 98328 98954 1 IS3 family transposase Morganella morganii S1
2 group_3618 FBDBKF_20280 2613 4157 1 tnp IS3 family IS1353 transposase Morganella morganii S1
3 group_127 EHELCC_07770 18031 18657 -1 IS3 family transposase Morganella morganii S2
4 group_3432 EHELCC_07835 28368 29222 1 Integrase catalytic domain-containing protein Morganella morganii S2
5 group_3618 EHELCC_19090 13003 14547 -1 tnp IS3 family IS1353 transposase Morganella morganii S2
6 group_127 NLDBIP_08095 18031 18657 -1 IS3 family transposase Morganella morganii S4
7 group_3432 NLDBIP_08160 28368 29222 1 Integrase catalytic domain-containing protein Morganella morganii S4
8 group_3618 NLDBIP_19565 6286 7830 -1 tnp IS3 family IS1353 transposase Morganella morganii S4
9 group_3432 LHKJJB_06105 227937 228791 -1 Integrase catalytic domain-containing protein Morganella morganii S3
10 group_127 LHKJJB_06170 238502 239128 1 IS3 family transposase Morganella morganii S3
11 group_3618 LHKJJB_19500 2613 4157 1 tnp IS3 family IS1353 transposase Morganella morganii S3
12 group_127 HKOGLL_04745 2622 3248 -1 IS3 family transposase Morganella morganii S5
13 group_3432 HKOGLL_04810 12959 13813 1 Integrase catalytic domain-containing protein Morganella morganii S5
14 group_3618 HKOGLL_19445 6286 7830 -1 tnp IS3 family IS1353 transposase Morganella morganii S5