PF13309


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13309, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 9 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13309
Description HTH domain

Occurence in the database

PF13309 is associated with 9 different proteins (see tab "Protein list" and "Profile")
The 9 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_196 FBDBKF_11765 4590 5291 -1 yheO putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains Morganella morganii S1
1 group_196 EHELCC_14540 129414 130115 1 yheO putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains Morganella morganii S2
2 group_196 NLDBIP_15635 133351 134052 1 yheO putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains Morganella morganii S4
3 group_196 LHKJJB_14975 4590 5291 -1 yheO putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains Morganella morganii S3
4 group_196 HKOGLL_19310 8060 8761 1 yheO putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains Morganella morganii S5
5 group_196 F4V73_RS14890 212977 213678 1 transcriptional regulator Morganella psychrotolerans
6 group_196 PMI_RS00745 190827 191459 1 PAS domain-containing protein Proteus mirabilis HI4320
7 group_196 PMI_RS13825 3071544 3072248 -1 transcriptional regulator Proteus mirabilis HI4320
8 group_196 PMI_RS17060 3755108 3755758 -1 PAS domain-containing protein Proteus mirabilis HI4320