Homologs in group_196

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11765 FBDBKF_11765 35.7 Morganella morganii S1 yheO putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains
EHELCC_14540 EHELCC_14540 35.7 Morganella morganii S2 yheO putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains
NLDBIP_15635 NLDBIP_15635 35.7 Morganella morganii S4 yheO putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains
LHKJJB_14975 LHKJJB_14975 35.7 Morganella morganii S3 yheO putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains
HKOGLL_19310 HKOGLL_19310 35.7 Morganella morganii S5 yheO putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains
F4V73_RS14890 F4V73_RS14890 35.7 Morganella psychrotolerans - transcriptional regulator
PMI_RS00745 PMI_RS00745 23.8 Proteus mirabilis HI4320 - PAS domain-containing protein
PMI_RS13825 PMI_RS13825 33.8 Proteus mirabilis HI4320 - transcriptional regulator

Distribution of the homologs in the orthogroup group_196

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_196

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P44761 8.67e-35 125 31 3 220 4 HI_0575 Uncharacterized protein HI_0575 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P64626 4.87e-33 122 33 4 218 4 yheO Uncharacterized protein YheO Shigella flexneri
P64624 4.87e-33 122 33 4 218 4 yheO Uncharacterized protein YheO Escherichia coli (strain K12)
P64625 4.87e-33 122 33 4 218 4 yheO Uncharacterized protein YheO Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9HXE2 5.56e-07 51 22 8 212 2 dauR Transcriptional regulator DauR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17060
Feature type CDS
Gene -
Product PAS domain-containing protein
Location 3755108 - 3755758 (strand: -1)
Length 651 (nucleotides) / 216 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_196
Orthogroup size 9
N. genomes 7

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Genomic region

Domains

PF08348 YheO-like PAS domain
PF13309 HTH domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2964 Transcription (K) K Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains

Protein Sequence

MDLPTNQKITEEDRHLLRSYIPFLDNLGQFLGDYCEIVLHSFEDLRHSVIHIVNGHVTGRGLGAPVTNIALEKLSKFNRTDQMWEVYFNTKSVRPFKSSSTLIVNNAGTPIGMICMNFALDMPLNALIDSFTDTNNLKHENFSQDVNNLVQNHLEPIKKRVYGNKNIPSKYKNLEIIKELNESGLFEFSATHKIVSAELGISSATIYKHLRNLSKK

Flanking regions ( +/- flanking 50bp)

CAACTTTTAACGTTAGAATTATTTAACTGTAATTATGGGTAAAATTTCTTATGGACCTTCCTACAAACCAAAAGATTACTGAAGAAGATCGGCATCTACTCCGCTCTTATATTCCTTTTCTCGATAATTTGGGGCAATTTCTCGGTGATTATTGTGAAATAGTGCTACATAGTTTTGAGGATTTACGCCATTCCGTTATCCACATAGTTAATGGACATGTTACTGGTCGTGGATTAGGTGCCCCCGTAACAAATATTGCTTTAGAAAAACTCTCAAAATTTAATCGAACAGATCAAATGTGGGAGGTTTATTTCAATACAAAAAGTGTTCGGCCATTTAAATCATCATCTACTTTAATTGTAAATAATGCAGGTACACCTATTGGTATGATTTGTATGAACTTTGCTCTCGATATGCCATTAAATGCATTAATAGATAGTTTTACTGATACAAATAATTTAAAACATGAAAATTTTTCACAAGATGTGAATAATCTTGTACAGAATCATCTAGAACCAATTAAAAAGAGAGTTTATGGAAATAAAAATATTCCAAGTAAATACAAGAACTTAGAGATAATTAAAGAATTAAATGAAAGTGGACTTTTTGAATTTTCAGCAACACATAAAATAGTATCCGCCGAATTAGGCATAAGCTCAGCAACAATTTATAAGCATTTAAGAAATTTAAGTAAGAAATAATAATAAGATTTACTTATTGTCTAGTAGGAGATGGGATCACTCCTGTCGTC