Homologs in group_178

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8 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11765 FBDBKF_11765 100.0 Morganella morganii S1 yheO putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains
EHELCC_14540 EHELCC_14540 100.0 Morganella morganii S2 yheO putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains
NLDBIP_15635 NLDBIP_15635 100.0 Morganella morganii S4 yheO putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains
LHKJJB_14975 LHKJJB_14975 100.0 Morganella morganii S3 yheO putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains
F4V73_RS14890 F4V73_RS14890 99.1 Morganella psychrotolerans - transcriptional regulator
PMI_RS00745 PMI_RS00745 23.5 Proteus mirabilis HI4320 - PAS domain-containing protein
PMI_RS13825 PMI_RS13825 81.5 Proteus mirabilis HI4320 - transcriptional regulator
PMI_RS17060 PMI_RS17060 35.7 Proteus mirabilis HI4320 - PAS domain-containing protein

Distribution of the homologs in the orthogroup group_178

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_178

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P64626 5.9e-128 364 75 1 234 4 yheO Uncharacterized protein YheO Shigella flexneri
P64624 5.9e-128 364 75 1 234 4 yheO Uncharacterized protein YheO Escherichia coli (strain K12)
P64625 5.9e-128 364 75 1 234 4 yheO Uncharacterized protein YheO Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P44761 1.46e-106 309 71 1 213 4 HI_0575 Uncharacterized protein HI_0575 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9HXE2 1.51e-12 67 27 7 209 2 dauR Transcriptional regulator DauR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_19310
Feature type CDS
Gene yheO
Product putative transcriptional regulator YheO, contains PAS and DNA-binding HTH domains
Location 8060 - 8761 (strand: 1)
Length 702 (nucleotides) / 233 (amino acids)
In genomic island -

Contig

Accession ZDB_713
Length 13350 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_178
Orthogroup size 9
N. genomes 7

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Genomic region

Domains

PF08348 YheO-like PAS domain
PF13309 HTH domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2964 Transcription (K) K Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains

Protein Sequence

MSNPVLFNDNDSDYIVNHPFTETDYEILKSYEAAVDGLALLIGEHCEIVLHSLEDLKRSAVKIANGHHTGRKVGSPITDLALRMLHDITDEDCSTSKAYFTRAKTGALMKSLTIAIRNKSRRIIGLLCINMNLDVPFSQIVQTFIPKELAEETSNVNFASSVEDLVAQTLEQTIEEVNADRNVANNAKNKQVVLNLYEKGIFDIKDAINLVAVRLNISKHTVYLYIRQFKNGE

Flanking regions ( +/- flanking 50bp)

AGATGAGTAAAACCAACGACGTTCACACGTTACAAAGAGTGGTGTATTAAATGTCTAACCCAGTATTATTTAATGACAATGATTCGGATTACATTGTAAATCATCCGTTTACTGAAACGGATTATGAGATCCTGAAATCCTATGAGGCGGCTGTTGATGGCCTGGCGCTGCTCATCGGTGAGCACTGTGAAATCGTTCTCCACTCACTGGAAGACCTGAAGCGCTCAGCGGTGAAGATCGCAAACGGTCACCATACCGGCCGTAAAGTCGGTTCCCCGATTACCGACCTCGCGCTGCGCATGCTGCACGACATTACAGATGAAGACTGCAGCACCTCGAAAGCCTATTTCACACGGGCGAAAACCGGGGCACTGATGAAATCGCTGACGATTGCTATCCGCAATAAATCACGCCGTATCATCGGGCTGCTGTGTATTAACATGAACCTGGATGTGCCGTTCTCCCAGATTGTTCAGACGTTTATCCCGAAAGAGCTGGCAGAAGAGACCTCCAATGTGAACTTTGCCTCTTCCGTTGAAGACCTGGTGGCACAGACGCTGGAACAGACGATTGAAGAAGTGAATGCCGACCGCAACGTGGCAAACAACGCGAAGAACAAACAGGTGGTACTGAACCTGTATGAGAAAGGGATATTTGATATCAAAGATGCCATCAACCTTGTGGCGGTGCGTCTGAATATCTCCAAACACACGGTCTATCTCTACATCCGCCAGTTTAAAAACGGCGAGTAAGGCAGCACGGAGCAATGACACCGTTATCTTACTGCCTGCTGGTTACCGGC