PF13183


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13183, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13183
Description 4Fe-4S dicluster domain

Occurence in the database

PF13183 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_775 FBDBKF_03585 120979 122175 -1 glpC anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC Morganella morganii S1
1 group_1036 FBDBKF_05840 170117 173185 -1 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase Morganella morganii S1
2 group_775 EHELCC_06950 124928 126124 1 glpC anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC Morganella morganii S2
3 group_1036 EHELCC_11750 8309 11377 1 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase Morganella morganii S2
4 group_775 NLDBIP_07275 124801 125997 1 glpC anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC Morganella morganii S4
5 group_1036 NLDBIP_12090 8264 11332 1 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase Morganella morganii S4
6 group_775 LHKJJB_06810 88547 89743 1 glpC anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC Morganella morganii S3
7 group_1036 LHKJJB_11950 8309 11377 1 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase Morganella morganii S3
8 group_775 HKOGLL_04120 143644 144840 -1 glpC anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC Morganella morganii S5
9 group_1036 HKOGLL_10565 8309 11377 1 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase Morganella morganii S5
10 group_1036 F4V73_RS03485 744045 747113 1 FAD-binding and (Fe-S)-binding domain-containing protein Morganella psychrotolerans
11 group_775 F4V73_RS11285 398770 399966 1 glpC anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC Morganella psychrotolerans
12 group_3895 PMI_RS09545 2083647 2085068 1 LutB/LldF family L-lactate oxidation iron-sulfur protein Proteus mirabilis HI4320
13 group_3895 PMI_RS15060 3341057 3342475 -1 LutB/LldF family L-lactate oxidation iron-sulfur protein Proteus mirabilis HI4320
14 group_775 PMI_RS17880 3928407 3929600 1 glpC anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC Proteus mirabilis HI4320